Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0786

Experiment: MoYLS4 with Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0785 and DvMF_0786 are separated by 432 nucleotidesDvMF_0786 and DvMF_0787 are separated by 230 nucleotides DvMF_0785: DvMF_0785 - hypothetical protein (RefSeq), at 942,641 to 943,018 _0785 DvMF_0786: DvMF_0786 - flagellin domain protein (RefSeq), at 943,451 to 944,338 _0786 DvMF_0787: DvMF_0787 - (p)ppGpp synthetase I, SpoT/RelA (RefSeq), at 944,569 to 946,737 _0787 Position (kb) 943 944 945Strain fitness (log2 ratio) -1 0 1at 942.625 kb on + strandat 942.685 kb on - strand, within DvMF_0785at 943.090 kb on + strandat 943.344 kb on - strandat 943.556 kb on - strand, within DvMF_0786at 943.948 kb on - strand, within DvMF_0786at 943.948 kb on - strand, within DvMF_0786at 943.948 kb on - strand, within DvMF_0786at 944.060 kb on + strand, within DvMF_0786at 944.069 kb on + strand, within DvMF_0786at 944.140 kb on - strand, within DvMF_0786at 944.140 kb on - strand, within DvMF_0786at 944.193 kb on - strand, within DvMF_0786at 944.194 kb on - strand, within DvMF_0786at 944.293 kb on + strandat 944.360 kb on - strandat 944.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.0125 mg/ml
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942,625 + -0.7
942,685 - DvMF_0785 0.12 -0.2
943,090 + -0.3
943,344 - -0.7
943,556 - DvMF_0786 0.12 -0.1
943,948 - DvMF_0786 0.56 -0.1
943,948 - DvMF_0786 0.56 -0.5
943,948 - DvMF_0786 0.56 -1.4
944,060 + DvMF_0786 0.69 -0.5
944,069 + DvMF_0786 0.70 -0.2
944,140 - DvMF_0786 0.78 -0.4
944,140 - DvMF_0786 0.78 -1.2
944,193 - DvMF_0786 0.84 -0.3
944,194 - DvMF_0786 0.84 -0.2
944,293 + -0.4
944,360 - -0.1
944,535 - -0.6

Or see this region's nucleotide sequence