Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3923 and Shewana3_3924 are separated by 627 nucleotides Shewana3_3924 and Shewana3_3925 are separated by 99 nucleotides
Shewana3_3923: Shewana3_3923 - TonB-dependent receptor (RefSeq), at 4,713,715 to 4,715,772
_3923
Shewana3_3924: Shewana3_3924 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,716,400 to 4,717,983
_3924
Shewana3_3925: Shewana3_3925 - bile acid:sodium symporter (RefSeq), at 4,718,083 to 4,719,012
_3925
Position (kb)
4716
4717
4718 Strain fitness (log2 ratio)
-2
-1
0
1 at 4715.444 kb on - strand, within Shewana3_3923 at 4715.536 kb on - strand, within Shewana3_3923 at 4715.681 kb on - strand at 4715.689 kb on + strand at 4715.697 kb on - strand at 4715.961 kb on - strand at 4715.998 kb on + strand at 4716.066 kb on + strand at 4716.130 kb on + strand at 4716.130 kb on + strand at 4716.310 kb on + strand at 4716.604 kb on + strand, within Shewana3_3924 at 4716.612 kb on - strand, within Shewana3_3924 at 4716.612 kb on - strand, within Shewana3_3924 at 4716.760 kb on + strand, within Shewana3_3924 at 4716.791 kb on + strand, within Shewana3_3924 at 4716.868 kb on + strand, within Shewana3_3924 at 4716.997 kb on - strand, within Shewana3_3924 at 4717.214 kb on - strand, within Shewana3_3924 at 4717.273 kb on + strand, within Shewana3_3924 at 4717.299 kb on - strand, within Shewana3_3924 at 4717.328 kb on + strand, within Shewana3_3924 at 4717.429 kb on + strand, within Shewana3_3924 at 4717.486 kb on - strand, within Shewana3_3924 at 4717.558 kb on + strand, within Shewana3_3924 at 4717.614 kb on + strand, within Shewana3_3924 at 4717.666 kb on + strand, within Shewana3_3924 at 4717.822 kb on + strand, within Shewana3_3924 at 4717.857 kb on + strand at 4717.865 kb on - strand at 4717.898 kb on + strand at 4718.033 kb on - strand at 4718.162 kb on - strand at 4718.240 kb on - strand, within Shewana3_3925 at 4718.403 kb on + strand, within Shewana3_3925 at 4718.411 kb on - strand, within Shewana3_3925 at 4718.421 kb on + strand, within Shewana3_3925 at 4718.702 kb on - strand, within Shewana3_3925 at 4718.773 kb on + strand, within Shewana3_3925 at 4718.865 kb on + strand, within Shewana3_3925 at 4718.865 kb on + strand, within Shewana3_3925 at 4718.865 kb on + strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,715,444 - Shewana3_3923 0.84 +0.5 4,715,536 - Shewana3_3923 0.88 +0.1 4,715,681 - +0.6 4,715,689 + -0.3 4,715,697 - -0.1 4,715,961 - -2.4 4,715,998 + -0.1 4,716,066 + -1.0 4,716,130 + +0.2 4,716,130 + -0.4 4,716,310 + +0.7 4,716,604 + Shewana3_3924 0.13 -0.8 4,716,612 - Shewana3_3924 0.13 -0.8 4,716,612 - Shewana3_3924 0.13 -0.5 4,716,760 + Shewana3_3924 0.23 +0.7 4,716,791 + Shewana3_3924 0.25 -0.5 4,716,868 + Shewana3_3924 0.30 -2.3 4,716,997 - Shewana3_3924 0.38 +0.5 4,717,214 - Shewana3_3924 0.51 +0.4 4,717,273 + Shewana3_3924 0.55 +0.3 4,717,299 - Shewana3_3924 0.57 -0.6 4,717,328 + Shewana3_3924 0.59 -0.4 4,717,429 + Shewana3_3924 0.65 +0.2 4,717,486 - Shewana3_3924 0.69 +0.8 4,717,558 + Shewana3_3924 0.73 -0.6 4,717,614 + Shewana3_3924 0.77 +0.1 4,717,666 + Shewana3_3924 0.80 -0.4 4,717,822 + Shewana3_3924 0.90 -1.1 4,717,857 + +0.3 4,717,865 - +0.3 4,717,898 + -0.8 4,718,033 - +0.3 4,718,162 - -1.2 4,718,240 - Shewana3_3925 0.17 +0.3 4,718,403 + Shewana3_3925 0.34 +0.4 4,718,411 - Shewana3_3925 0.35 +0.7 4,718,421 + Shewana3_3925 0.36 +0.4 4,718,702 - Shewana3_3925 0.67 +0.0 4,718,773 + Shewana3_3925 0.74 +0.7 4,718,865 + Shewana3_3925 0.84 -0.6 4,718,865 + Shewana3_3925 0.84 +0.2 4,718,865 + Shewana3_3925 0.84 +0.1 4,718,873 - Shewana3_3925 0.85 +0.5 4,718,873 - Shewana3_3925 0.85 -0.3 4,718,873 - Shewana3_3925 0.85 +0.8 4,718,873 - Shewana3_3925 0.85 -0.6 4,718,974 - +0.6
Or see this region's nucleotide sequence