Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2970 and Shewana3_2971 are separated by 255 nucleotides Shewana3_2971 and Shewana3_2972 are separated by 20 nucleotides Shewana3_2972 and Shewana3_2973 are separated by 41 nucleotides Shewana3_2973 and Shewana3_2974 are separated by 77 nucleotides
Shewana3_2970: Shewana3_2970 - HAAAP family transport protein (RefSeq), at 3,570,711 to 3,571,982
_2970
Shewana3_2971: Shewana3_2971 - putative endoribonuclease L-PSP (RefSeq), at 3,572,238 to 3,572,621
_2971
Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916
_2972
Shewana3_2973: Shewana3_2973 - YheO domain-containing protein (RefSeq), at 3,573,958 to 3,574,638
_2973
Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446
_2974
Position (kb)
3572
3573
3574 Strain fitness (log2 ratio)
-1
0
1 at 3571.983 kb on + strand at 3572.266 kb on + strand at 3572.364 kb on + strand, within Shewana3_2971 at 3572.696 kb on + strand at 3572.697 kb on + strand at 3572.820 kb on + strand, within Shewana3_2972 at 3573.281 kb on + strand, within Shewana3_2972 at 3573.402 kb on + strand, within Shewana3_2972 at 3573.971 kb on + strand at 3574.070 kb on + strand, within Shewana3_2973 at 3574.070 kb on + strand, within Shewana3_2973 at 3574.086 kb on + strand, within Shewana3_2973 at 3574.661 kb on + strand at 3574.661 kb on + strand at 3574.760 kb on - strand at 3574.824 kb on + strand at 3574.911 kb on + strand, within Shewana3_2974
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,571,983 + -0.4 3,572,266 + +0.4 3,572,364 + Shewana3_2971 0.33 +0.4 3,572,696 + -1.2 3,572,697 + -0.6 3,572,820 + Shewana3_2972 0.14 +0.1 3,573,281 + Shewana3_2972 0.50 -0.7 3,573,402 + Shewana3_2972 0.60 -0.7 3,573,971 + +0.1 3,574,070 + Shewana3_2973 0.16 -1.6 3,574,070 + Shewana3_2973 0.16 -0.5 3,574,086 + Shewana3_2973 0.19 -0.5 3,574,661 + -0.8 3,574,661 + +0.0 3,574,760 - +0.3 3,574,824 + -0.3 3,574,911 + Shewana3_2974 0.11 -0.4
Or see this region's nucleotide sequence