Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2972

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2970 and Shewana3_2971 are separated by 255 nucleotidesShewana3_2971 and Shewana3_2972 are separated by 20 nucleotidesShewana3_2972 and Shewana3_2973 are separated by 41 nucleotidesShewana3_2973 and Shewana3_2974 are separated by 77 nucleotides Shewana3_2970: Shewana3_2970 - HAAAP family transport protein (RefSeq), at 3,570,711 to 3,571,982 _2970 Shewana3_2971: Shewana3_2971 - putative endoribonuclease L-PSP (RefSeq), at 3,572,238 to 3,572,621 _2971 Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916 _2972 Shewana3_2973: Shewana3_2973 - YheO domain-containing protein (RefSeq), at 3,573,958 to 3,574,638 _2973 Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446 _2974 Position (kb) 3572 3573 3574Strain fitness (log2 ratio) -1 0 1at 3571.983 kb on + strandat 3572.266 kb on + strandat 3572.364 kb on + strand, within Shewana3_2971at 3572.696 kb on + strandat 3572.697 kb on + strandat 3572.820 kb on + strand, within Shewana3_2972at 3573.281 kb on + strand, within Shewana3_2972at 3573.402 kb on + strand, within Shewana3_2972at 3573.971 kb on + strandat 3574.070 kb on + strand, within Shewana3_2973at 3574.070 kb on + strand, within Shewana3_2973at 3574.086 kb on + strand, within Shewana3_2973at 3574.661 kb on + strandat 3574.661 kb on + strandat 3574.760 kb on - strandat 3574.824 kb on + strandat 3574.911 kb on + strand, within Shewana3_2974

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,571,983 + -0.4
3,572,266 + +0.4
3,572,364 + Shewana3_2971 0.33 +0.4
3,572,696 + -1.2
3,572,697 + -0.6
3,572,820 + Shewana3_2972 0.14 +0.1
3,573,281 + Shewana3_2972 0.50 -0.7
3,573,402 + Shewana3_2972 0.60 -0.7
3,573,971 + +0.1
3,574,070 + Shewana3_2973 0.16 -1.6
3,574,070 + Shewana3_2973 0.16 -0.5
3,574,086 + Shewana3_2973 0.19 -0.5
3,574,661 + -0.8
3,574,661 + +0.0
3,574,760 - +0.3
3,574,824 + -0.3
3,574,911 + Shewana3_2974 0.11 -0.4

Or see this region's nucleotide sequence