Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2171 and Shewana3_2172 are separated by 65 nucleotides Shewana3_2172 and Shewana3_2173 overlap by 8 nucleotides Shewana3_2173 and Shewana3_2174 are separated by 66 nucleotides Shewana3_2174 and Shewana3_2175 are separated by 113 nucleotides
Shewana3_2171: Shewana3_2171 - electron transport complex, RnfABCDGE type, D subunit (RefSeq), at 2,604,281 to 2,605,330
_2171
Shewana3_2172: Shewana3_2172 - electron transport complex protein RnfG (RefSeq), at 2,605,396 to 2,606,022
_2172
Shewana3_2173: Shewana3_2173 - electron transport complex RsxE subunit (RefSeq), at 2,606,015 to 2,606,713
_2173
Shewana3_2174: Shewana3_2174 - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq), at 2,606,780 to 2,607,415
_2174
Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851
_2175
Position (kb)
2606
2607 Strain fitness (log2 ratio)
-1
0
1 at 2606.641 kb on + strand, within Shewana3_2173 at 2606.950 kb on + strand, within Shewana3_2174 at 2606.952 kb on + strand, within Shewana3_2174 at 2607.097 kb on + strand, within Shewana3_2174 at 2607.486 kb on - strand at 2607.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,606,641 + Shewana3_2173 0.90 -1.2 2,606,950 + Shewana3_2174 0.27 +1.0 2,606,952 + Shewana3_2174 0.27 -0.6 2,607,097 + Shewana3_2174 0.50 -0.3 2,607,486 - +0.4 2,607,621 + +0.7
Or see this region's nucleotide sequence