Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2173

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2171 and Shewana3_2172 are separated by 65 nucleotidesShewana3_2172 and Shewana3_2173 overlap by 8 nucleotidesShewana3_2173 and Shewana3_2174 are separated by 66 nucleotidesShewana3_2174 and Shewana3_2175 are separated by 113 nucleotides Shewana3_2171: Shewana3_2171 - electron transport complex, RnfABCDGE type, D subunit (RefSeq), at 2,604,281 to 2,605,330 _2171 Shewana3_2172: Shewana3_2172 - electron transport complex protein RnfG (RefSeq), at 2,605,396 to 2,606,022 _2172 Shewana3_2173: Shewana3_2173 - electron transport complex RsxE subunit (RefSeq), at 2,606,015 to 2,606,713 _2173 Shewana3_2174: Shewana3_2174 - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq), at 2,606,780 to 2,607,415 _2174 Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851 _2175 Position (kb) 2606 2607Strain fitness (log2 ratio) -1 0 1at 2606.641 kb on + strand, within Shewana3_2173at 2606.950 kb on + strand, within Shewana3_2174at 2606.952 kb on + strand, within Shewana3_2174at 2607.097 kb on + strand, within Shewana3_2174at 2607.486 kb on - strandat 2607.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,606,641 + Shewana3_2173 0.90 -1.2
2,606,950 + Shewana3_2174 0.27 +1.0
2,606,952 + Shewana3_2174 0.27 -0.6
2,607,097 + Shewana3_2174 0.50 -0.3
2,607,486 - +0.4
2,607,621 + +0.7

Or see this region's nucleotide sequence