Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1981 and Shewana3_1982 are separated by 72 nucleotides Shewana3_1982 and Shewana3_1983 are separated by 59 nucleotides Shewana3_1983 and Shewana3_1984 are separated by 217 nucleotides
Shewana3_1981: Shewana3_1981 - orotidine 5'-phosphate decarboxylase (RefSeq), at 2,359,529 to 2,360,224
_1981
Shewana3_1982: Shewana3_1982 - short chain dehydrogenase (RefSeq), at 2,360,297 to 2,361,124
_1982
Shewana3_1983: Shewana3_1983 - hypothetical protein (RefSeq), at 2,361,184 to 2,361,726
_1983
Shewana3_1984: Shewana3_1984 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 2,361,944 to 2,363,701
_1984
Position (kb)
2361
2362 Strain fitness (log2 ratio)
-1
0
1 at 2360.475 kb on - strand, within Shewana3_1982 at 2360.536 kb on - strand, within Shewana3_1982 at 2360.969 kb on + strand, within Shewana3_1982 at 2361.043 kb on - strand at 2361.210 kb on + strand at 2361.210 kb on + strand at 2361.210 kb on + strand at 2361.462 kb on + strand, within Shewana3_1983 at 2361.550 kb on - strand, within Shewana3_1983 at 2361.568 kb on + strand, within Shewana3_1983 at 2362.100 kb on + strand at 2362.112 kb on + strand at 2362.313 kb on + strand, within Shewana3_1984 at 2362.509 kb on + strand, within Shewana3_1984
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,360,475 - Shewana3_1982 0.21 +0.1 2,360,536 - Shewana3_1982 0.29 -1.0 2,360,969 + Shewana3_1982 0.81 -0.6 2,361,043 - -0.3 2,361,210 + -0.0 2,361,210 + -0.7 2,361,210 + +0.6 2,361,462 + Shewana3_1983 0.51 +0.4 2,361,550 - Shewana3_1983 0.67 +0.8 2,361,568 + Shewana3_1983 0.71 +0.3 2,362,100 + -0.3 2,362,112 + +0.7 2,362,313 + Shewana3_1984 0.21 +0.2 2,362,509 + Shewana3_1984 0.32 -0.9
Or see this region's nucleotide sequence