Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1775 and Shewana3_1776 are separated by 15 nucleotides Shewana3_1776 and Shewana3_1777 are separated by 275 nucleotides Shewana3_1777 and Shewana3_1778 are separated by 28 nucleotides
Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056
_1775
Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530
_1776
Shewana3_1777: Shewana3_1777 - putative solute/DNA competence effector (RefSeq), at 2,091,806 to 2,092,450
_1777
Shewana3_1778: Shewana3_1778 - carboxy-terminal protease (RefSeq), at 2,092,479 to 2,094,530
_1778
Position (kb)
2091
2092
2093 Strain fitness (log2 ratio)
-2
-1
0
1 at 2090.847 kb on + strand, within Shewana3_1775 at 2090.875 kb on - strand, within Shewana3_1775 at 2091.269 kb on - strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.567 kb on + strand at 2091.586 kb on - strand at 2091.629 kb on - strand at 2091.725 kb on + strand at 2091.954 kb on + strand, within Shewana3_1777 at 2092.047 kb on + strand, within Shewana3_1777 at 2092.076 kb on + strand, within Shewana3_1777 at 2092.402 kb on + strand at 2092.851 kb on + strand, within Shewana3_1778 at 2092.889 kb on + strand, within Shewana3_1778
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,090,847 + Shewana3_1775 0.30 -0.4 2,090,875 - Shewana3_1775 0.39 +0.0 2,091,269 - Shewana3_1776 0.43 -1.3 2,091,281 + Shewana3_1776 0.46 -0.7 2,091,281 + Shewana3_1776 0.46 +0.0 2,091,281 + Shewana3_1776 0.46 -0.3 2,091,567 + -0.2 2,091,586 - -0.1 2,091,629 - -0.4 2,091,725 + -0.3 2,091,954 + Shewana3_1777 0.23 -1.8 2,092,047 + Shewana3_1777 0.37 -1.0 2,092,076 + Shewana3_1777 0.42 -0.6 2,092,402 + -0.6 2,092,851 + Shewana3_1778 0.18 -1.0 2,092,889 + Shewana3_1778 0.20 +0.4
Or see this region's nucleotide sequence