Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1777

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1775 and Shewana3_1776 are separated by 15 nucleotidesShewana3_1776 and Shewana3_1777 are separated by 275 nucleotidesShewana3_1777 and Shewana3_1778 are separated by 28 nucleotides Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056 _1775 Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530 _1776 Shewana3_1777: Shewana3_1777 - putative solute/DNA competence effector (RefSeq), at 2,091,806 to 2,092,450 _1777 Shewana3_1778: Shewana3_1778 - carboxy-terminal protease (RefSeq), at 2,092,479 to 2,094,530 _1778 Position (kb) 2091 2092 2093Strain fitness (log2 ratio) -2 -1 0 1at 2090.847 kb on + strand, within Shewana3_1775at 2090.875 kb on - strand, within Shewana3_1775at 2091.269 kb on - strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.567 kb on + strandat 2091.586 kb on - strandat 2091.629 kb on - strandat 2091.725 kb on + strandat 2091.954 kb on + strand, within Shewana3_1777at 2092.047 kb on + strand, within Shewana3_1777at 2092.076 kb on + strand, within Shewana3_1777at 2092.402 kb on + strandat 2092.851 kb on + strand, within Shewana3_1778at 2092.889 kb on + strand, within Shewana3_1778

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
2,090,847 + Shewana3_1775 0.30 -0.4
2,090,875 - Shewana3_1775 0.39 +0.0
2,091,269 - Shewana3_1776 0.43 -1.3
2,091,281 + Shewana3_1776 0.46 -0.7
2,091,281 + Shewana3_1776 0.46 +0.0
2,091,281 + Shewana3_1776 0.46 -0.3
2,091,567 + -0.2
2,091,586 - -0.1
2,091,629 - -0.4
2,091,725 + -0.3
2,091,954 + Shewana3_1777 0.23 -1.8
2,092,047 + Shewana3_1777 0.37 -1.0
2,092,076 + Shewana3_1777 0.42 -0.6
2,092,402 + -0.6
2,092,851 + Shewana3_1778 0.18 -1.0
2,092,889 + Shewana3_1778 0.20 +0.4

Or see this region's nucleotide sequence