Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1032 and rpsO are separated by 126 nucleotides rpsO and Shewana3_1034 are separated by 86 nucleotides Shewana3_1034 and Shewana3_1035 are separated by 218 nucleotides
Shewana3_1032: Shewana3_1032 - tRNA pseudouridine synthase B (RefSeq), at 1,205,386 to 1,206,339
_1032
Shewana3_1033: rpsO - 30S ribosomal protein S15 (RefSeq), at 1,206,466 to 1,206,735
rpsO
Shewana3_1034: Shewana3_1034 - diguanylate cyclase/phosphodiesterase (RefSeq), at 1,206,822 to 1,208,846
_1034
Shewana3_1035: Shewana3_1035 - polynucleotide phosphorylase/polyadenylase (RefSeq), at 1,209,065 to 1,211,164
_1035
Position (kb)
1206
1207
1208
1209 Strain fitness (log2 ratio)
-1
0
1 at 1206.307 kb on + strand at 1206.889 kb on + strand at 1207.138 kb on + strand, within Shewana3_1034 at 1207.192 kb on - strand, within Shewana3_1034 at 1207.804 kb on + strand, within Shewana3_1034 at 1207.867 kb on - strand, within Shewana3_1034 at 1208.336 kb on + strand, within Shewana3_1034 at 1208.336 kb on + strand, within Shewana3_1034 at 1208.344 kb on - strand, within Shewana3_1034 at 1208.354 kb on - strand, within Shewana3_1034 at 1208.839 kb on + strand at 1208.929 kb on + strand at 1208.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,206,307 + +0.8 1,206,889 + -0.6 1,207,138 + Shewana3_1034 0.16 +0.5 1,207,192 - Shewana3_1034 0.18 +0.6 1,207,804 + Shewana3_1034 0.48 +0.2 1,207,867 - Shewana3_1034 0.52 -0.5 1,208,336 + Shewana3_1034 0.75 -0.4 1,208,336 + Shewana3_1034 0.75 +0.1 1,208,344 - Shewana3_1034 0.75 +0.1 1,208,354 - Shewana3_1034 0.76 -0.2 1,208,839 + -0.5 1,208,929 + +0.6 1,208,937 - +0.3
Or see this region's nucleotide sequence