Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0978

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0977 and Shewana3_0978 are separated by 91 nucleotidesShewana3_0978 and Shewana3_0979 are separated by 310 nucleotides Shewana3_0977: Shewana3_0977 - SAM-dependent methyltransferase (RefSeq), at 1,147,689 to 1,148,879 _0977 Shewana3_0978: Shewana3_0978 - ribose-5-phosphate isomerase A (RefSeq), at 1,148,971 to 1,149,630 _0978 Shewana3_0979: Shewana3_0979 - hypothetical protein (RefSeq), at 1,149,941 to 1,150,867 _0979 Position (kb) 1148 1149 1150Strain fitness (log2 ratio) -2 -1 0 1at 1148.078 kb on - strand, within Shewana3_0977at 1148.198 kb on - strand, within Shewana3_0977at 1148.310 kb on - strand, within Shewana3_0977at 1148.310 kb on - strand, within Shewana3_0977at 1148.453 kb on + strand, within Shewana3_0977at 1148.720 kb on - strand, within Shewana3_0977at 1148.850 kb on + strandat 1148.890 kb on + strandat 1148.991 kb on - strandat 1149.757 kb on - strandat 1149.757 kb on - strandat 1149.852 kb on + strandat 1150.410 kb on + strand, within Shewana3_0979at 1150.549 kb on + strand, within Shewana3_0979at 1150.549 kb on + strand, within Shewana3_0979

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
1,148,078 - Shewana3_0977 0.33 -1.2
1,148,198 - Shewana3_0977 0.43 +0.0
1,148,310 - Shewana3_0977 0.52 -2.3
1,148,310 - Shewana3_0977 0.52 -0.1
1,148,453 + Shewana3_0977 0.64 -1.3
1,148,720 - Shewana3_0977 0.87 +0.4
1,148,850 + +0.1
1,148,890 + -0.5
1,148,991 - -1.7
1,149,757 - +0.6
1,149,757 - +0.1
1,149,852 + -1.3
1,150,410 + Shewana3_0979 0.51 +0.6
1,150,549 + Shewana3_0979 0.66 +0.6
1,150,549 + Shewana3_0979 0.66 -0.8

Or see this region's nucleotide sequence