Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0840 and Shewana3_0841 are separated by 3 nucleotides Shewana3_0841 and Shewana3_0842 overlap by 4 nucleotides
Shewana3_0840: Shewana3_0840 - hypothetical protein (RefSeq), at 972,865 to 973,701
_0840
Shewana3_0841: Shewana3_0841 - peptidase M16 domain-containing protein (RefSeq), at 973,705 to 975,243
_0841
Shewana3_0842: Shewana3_0842 - peptidase M16 domain-containing protein (RefSeq), at 975,240 to 976,655
_0842
Position (kb) 973
974
975
976 Strain fitness (log2 ratio) -1
0
1 at 972.707 kb on - strand at 972.707 kb on - strand at 972.854 kb on + strand at 972.862 kb on - strand at 972.998 kb on - strand, within Shewana3_0840 at 973.014 kb on + strand, within Shewana3_0840 at 973.015 kb on + strand, within Shewana3_0840 at 973.258 kb on + strand, within Shewana3_0840 at 973.263 kb on + strand, within Shewana3_0840 at 973.263 kb on + strand, within Shewana3_0840 at 973.388 kb on + strand, within Shewana3_0840 at 973.435 kb on + strand, within Shewana3_0840 at 973.443 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.832 kb on - strand at 973.855 kb on + strand at 973.938 kb on + strand, within Shewana3_0841 at 973.990 kb on - strand, within Shewana3_0841 at 974.055 kb on + strand, within Shewana3_0841 at 974.098 kb on - strand, within Shewana3_0841 at 974.250 kb on - strand, within Shewana3_0841 at 974.406 kb on - strand, within Shewana3_0841 at 974.424 kb on + strand, within Shewana3_0841 at 974.439 kb on - strand, within Shewana3_0841 at 974.503 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.577 kb on + strand, within Shewana3_0841 at 974.594 kb on + strand, within Shewana3_0841 at 974.618 kb on + strand, within Shewana3_0841 at 974.803 kb on + strand, within Shewana3_0841 at 974.803 kb on + strand, within Shewana3_0841 at 974.803 kb on + strand, within Shewana3_0841 at 974.806 kb on - strand, within Shewana3_0841 at 974.811 kb on - strand, within Shewana3_0841 at 974.812 kb on + strand, within Shewana3_0841 at 974.940 kb on + strand, within Shewana3_0841 at 974.948 kb on + strand, within Shewana3_0841 at 974.958 kb on + strand, within Shewana3_0841 at 974.966 kb on - strand, within Shewana3_0841 at 974.973 kb on + strand, within Shewana3_0841 at 975.005 kb on - strand, within Shewana3_0841 at 975.165 kb on + strand at 975.262 kb on - strand at 975.319 kb on - strand at 975.332 kb on + strand at 975.337 kb on + strand at 975.340 kb on - strand at 975.345 kb on - strand at 975.385 kb on - strand, within Shewana3_0842 at 975.400 kb on + strand, within Shewana3_0842 at 975.408 kb on - strand, within Shewana3_0842 at 975.539 kb on + strand, within Shewana3_0842 at 975.547 kb on - strand, within Shewana3_0842 at 975.859 kb on - strand, within Shewana3_0842 at 975.898 kb on + strand, within Shewana3_0842 at 975.906 kb on - strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.916 kb on - strand, within Shewana3_0842 at 975.983 kb on - strand, within Shewana3_0842 at 976.057 kb on - strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.222 kb on - strand, within Shewana3_0842
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 972,707 - +0.5 972,707 - +0.0 972,854 + -0.1 972,862 - +0.1 972,998 - Shewana3_0840 0.16 +0.7 973,014 + Shewana3_0840 0.18 -0.6 973,015 + Shewana3_0840 0.18 +0.3 973,258 + Shewana3_0840 0.47 -0.8 973,263 + Shewana3_0840 0.48 +0.0 973,263 + Shewana3_0840 0.48 +0.1 973,388 + Shewana3_0840 0.62 +0.4 973,435 + Shewana3_0840 0.68 -0.1 973,443 - Shewana3_0840 0.69 +0.7 973,499 - Shewana3_0840 0.76 +0.5 973,499 - Shewana3_0840 0.76 +0.4 973,499 - Shewana3_0840 0.76 -0.3 973,832 - +0.9 973,855 + +0.3 973,938 + Shewana3_0841 0.15 -0.1 973,990 - Shewana3_0841 0.19 +0.2 974,055 + Shewana3_0841 0.23 -0.3 974,098 - Shewana3_0841 0.26 -0.7 974,250 - Shewana3_0841 0.35 +0.3 974,406 - Shewana3_0841 0.46 -0.7 974,424 + Shewana3_0841 0.47 +0.0 974,439 - Shewana3_0841 0.48 +0.1 974,503 - Shewana3_0841 0.52 -0.1 974,556 - Shewana3_0841 0.55 -0.8 974,556 - Shewana3_0841 0.55 +0.1 974,556 - Shewana3_0841 0.55 +0.6 974,556 - Shewana3_0841 0.55 +0.0 974,577 + Shewana3_0841 0.57 -0.7 974,594 + Shewana3_0841 0.58 -0.9 974,618 + Shewana3_0841 0.59 -0.4 974,803 + Shewana3_0841 0.71 -0.3 974,803 + Shewana3_0841 0.71 -1.1 974,803 + Shewana3_0841 0.71 +0.3 974,806 - Shewana3_0841 0.72 -0.8 974,811 - Shewana3_0841 0.72 -0.2 974,812 + Shewana3_0841 0.72 +0.4 974,940 + Shewana3_0841 0.80 +0.9 974,948 + Shewana3_0841 0.81 +0.6 974,958 + Shewana3_0841 0.81 +0.7 974,966 - Shewana3_0841 0.82 +0.2 974,973 + Shewana3_0841 0.82 +0.5 975,005 - Shewana3_0841 0.84 -0.6 975,165 + +0.6 975,262 - +0.7 975,319 - -0.6 975,332 + +0.3 975,337 + -0.7 975,340 - -0.4 975,345 - -0.4 975,385 - Shewana3_0842 0.10 -0.4 975,400 + Shewana3_0842 0.11 -0.5 975,408 - Shewana3_0842 0.12 -0.7 975,539 + Shewana3_0842 0.21 -1.0 975,547 - Shewana3_0842 0.22 -0.7 975,859 - Shewana3_0842 0.44 +0.6 975,898 + Shewana3_0842 0.46 -0.2 975,906 - Shewana3_0842 0.47 +1.2 975,908 + Shewana3_0842 0.47 -1.5 975,908 + Shewana3_0842 0.47 -1.0 975,916 - Shewana3_0842 0.48 -0.6 975,983 - Shewana3_0842 0.52 +0.8 976,057 - Shewana3_0842 0.58 -0.4 976,096 + Shewana3_0842 0.60 +0.1 976,096 + Shewana3_0842 0.60 -0.7 976,096 + Shewana3_0842 0.60 -0.1 976,096 + Shewana3_0842 0.60 +0.5 976,096 + Shewana3_0842 0.60 -0.1 976,096 + Shewana3_0842 0.60 -0.2 976,096 + Shewana3_0842 0.60 -0.8 976,104 - Shewana3_0842 0.61 +0.4 976,104 - Shewana3_0842 0.61 +0.8 976,104 - Shewana3_0842 0.61 +0.2 976,104 - Shewana3_0842 0.61 -0.0 976,222 - Shewana3_0842 0.69 -0.1
Or see this region's nucleotide sequence