Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0517

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0516 and Shewana3_0517 are separated by 15 nucleotidesShewana3_0517 and Shewana3_0518 are separated by 77 nucleotides Shewana3_0516: Shewana3_0516 - outer membrane efflux family protein, putative (RefSeq), at 604,751 to 606,121 _0516 Shewana3_0517: Shewana3_0517 - RND family efflux transporter MFP subunit (RefSeq), at 606,137 to 607,417 _0517 Shewana3_0518: Shewana3_0518 - CzcA family heavy metal efflux protein (RefSeq), at 607,495 to 610,707 _0518 Position (kb) 606 607 608Strain fitness (log2 ratio) -2 -1 0 1at 605.159 kb on - strand, within Shewana3_0516at 605.224 kb on + strand, within Shewana3_0516at 605.234 kb on - strand, within Shewana3_0516at 605.276 kb on - strand, within Shewana3_0516at 605.295 kb on + strand, within Shewana3_0516at 605.303 kb on + strand, within Shewana3_0516at 605.305 kb on + strand, within Shewana3_0516at 605.311 kb on - strand, within Shewana3_0516at 605.326 kb on - strand, within Shewana3_0516at 605.593 kb on + strand, within Shewana3_0516at 605.601 kb on - strand, within Shewana3_0516at 605.628 kb on + strand, within Shewana3_0516at 605.630 kb on - strand, within Shewana3_0516at 605.669 kb on - strand, within Shewana3_0516at 605.669 kb on - strand, within Shewana3_0516at 605.712 kb on - strand, within Shewana3_0516at 606.035 kb on - strandat 606.135 kb on - strandat 606.194 kb on + strandat 606.233 kb on + strandat 606.249 kb on + strandat 606.249 kb on + strandat 606.303 kb on - strand, within Shewana3_0517at 606.442 kb on - strand, within Shewana3_0517at 606.490 kb on + strand, within Shewana3_0517at 606.661 kb on + strand, within Shewana3_0517at 606.727 kb on - strand, within Shewana3_0517at 606.884 kb on + strand, within Shewana3_0517at 606.913 kb on + strand, within Shewana3_0517at 607.031 kb on + strand, within Shewana3_0517at 607.075 kb on + strand, within Shewana3_0517at 607.101 kb on - strand, within Shewana3_0517at 607.144 kb on - strand, within Shewana3_0517at 607.277 kb on - strand, within Shewana3_0517at 607.332 kb on - strandat 607.384 kb on + strandat 607.384 kb on + strandat 607.392 kb on - strandat 607.392 kb on - strandat 607.392 kb on - strandat 607.392 kb on - strandat 607.640 kb on + strandat 607.659 kb on - strandat 607.711 kb on + strandat 607.745 kb on + strandat 607.783 kb on - strandat 607.865 kb on + strand, within Shewana3_0518at 607.895 kb on + strand, within Shewana3_0518at 608.001 kb on + strand, within Shewana3_0518at 608.091 kb on + strand, within Shewana3_0518at 608.230 kb on - strand, within Shewana3_0518at 608.268 kb on + strand, within Shewana3_0518at 608.291 kb on + strand, within Shewana3_0518at 608.301 kb on + strand, within Shewana3_0518

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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605,159 - Shewana3_0516 0.30 -2.0
605,224 + Shewana3_0516 0.35 +0.5
605,234 - Shewana3_0516 0.35 -0.2
605,276 - Shewana3_0516 0.38 -0.0
605,295 + Shewana3_0516 0.40 +0.6
605,303 + Shewana3_0516 0.40 +0.3
605,305 + Shewana3_0516 0.40 +0.0
605,311 - Shewana3_0516 0.41 -0.7
605,326 - Shewana3_0516 0.42 +0.5
605,593 + Shewana3_0516 0.61 +0.6
605,601 - Shewana3_0516 0.62 -0.9
605,628 + Shewana3_0516 0.64 -1.3
605,630 - Shewana3_0516 0.64 +0.5
605,669 - Shewana3_0516 0.67 -0.4
605,669 - Shewana3_0516 0.67 +0.7
605,712 - Shewana3_0516 0.70 -0.4
606,035 - -0.3
606,135 - +1.0
606,194 + +0.8
606,233 + +0.7
606,249 + +0.5
606,249 + +0.5
606,303 - Shewana3_0517 0.13 +0.6
606,442 - Shewana3_0517 0.24 +0.0
606,490 + Shewana3_0517 0.28 -1.1
606,661 + Shewana3_0517 0.41 +0.8
606,727 - Shewana3_0517 0.46 -1.0
606,884 + Shewana3_0517 0.58 +1.0
606,913 + Shewana3_0517 0.61 +0.5
607,031 + Shewana3_0517 0.70 -0.6
607,075 + Shewana3_0517 0.73 -0.6
607,101 - Shewana3_0517 0.75 +0.0
607,144 - Shewana3_0517 0.79 -0.3
607,277 - Shewana3_0517 0.89 -0.5
607,332 - +0.3
607,384 + +0.1
607,384 + -0.0
607,392 - -0.5
607,392 - +0.3
607,392 - +0.2
607,392 - -0.5
607,640 + -0.3
607,659 - -0.5
607,711 + +0.3
607,745 + +0.0
607,783 - -0.3
607,865 + Shewana3_0518 0.12 +0.6
607,895 + Shewana3_0518 0.12 +0.1
608,001 + Shewana3_0518 0.16 -2.0
608,091 + Shewana3_0518 0.19 -0.3
608,230 - Shewana3_0518 0.23 +0.4
608,268 + Shewana3_0518 0.24 +0.3
608,291 + Shewana3_0518 0.25 -0.2
608,301 + Shewana3_0518 0.25 +0.5

Or see this region's nucleotide sequence