Strain Fitness in Shewanella amazonensis SB2B around Sama_1315

Experiment: Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1314 and adk are separated by 141 nucleotidesadk and hemH are separated by 119 nucleotides Sama_1314: Sama_1314 - putative thioredoxin-like protein (RefSeq), at 1,598,135 to 1,599,010 _1314 Sama_1315: adk - adenylate kinase (RefSeq), at 1,599,152 to 1,599,796 adk Sama_1316: hemH - ferrochelatase (RefSeq), at 1,599,916 to 1,600,899 hemH Position (kb) 1599 1600Strain fitness (log2 ratio) -1 0 1 2at 1598.367 kb on - strand, within Sama_1314at 1598.367 kb on - strand, within Sama_1314at 1598.403 kb on + strand, within Sama_1314at 1598.503 kb on - strand, within Sama_1314at 1598.563 kb on + strand, within Sama_1314at 1598.563 kb on + strand, within Sama_1314at 1598.564 kb on - strand, within Sama_1314at 1598.564 kb on - strand, within Sama_1314at 1598.650 kb on + strand, within Sama_1314at 1598.702 kb on + strand, within Sama_1314at 1598.702 kb on + strand, within Sama_1314at 1598.702 kb on + strand, within Sama_1314at 1598.917 kb on - strand, within Sama_1314at 1598.929 kb on + strandat 1598.965 kb on + strandat 1599.030 kb on + strandat 1599.058 kb on - strandat 1599.080 kb on + strandat 1599.817 kb on + strandat 1599.862 kb on + strandat 1599.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine
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1,598,367 - Sama_1314 0.26 -0.7
1,598,367 - Sama_1314 0.26 -0.6
1,598,403 + Sama_1314 0.31 +0.2
1,598,503 - Sama_1314 0.42 +0.1
1,598,563 + Sama_1314 0.49 +0.7
1,598,563 + Sama_1314 0.49 +0.3
1,598,564 - Sama_1314 0.49 -0.0
1,598,564 - Sama_1314 0.49 -0.5
1,598,650 + Sama_1314 0.59 -0.4
1,598,702 + Sama_1314 0.65 -1.2
1,598,702 + Sama_1314 0.65 +1.1
1,598,702 + Sama_1314 0.65 +0.3
1,598,917 - Sama_1314 0.89 -0.3
1,598,929 + +2.0
1,598,965 + +1.0
1,599,030 + +0.1
1,599,058 - -0.6
1,599,080 + -1.4
1,599,817 + +0.1
1,599,862 + +1.6
1,599,862 + -1.2

Or see this region's nucleotide sequence