Strain Fitness in Shewanella oneidensis MR-1 around SO2733

Experiment: perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2732 and SO2733 are separated by 165 nucleotidesSO2733 and SO2734 are separated by 59 nucleotides SO2732: SO2732 - ISSod6, transposase (NCBI ptt file), at 2,848,930 to 2,849,688 SO2732 SO2733: SO2733 - ISSod1, transposase OrfA (NCBI ptt file), at 2,849,854 to 2,850,144 SO2733 SO2734: SO2734 - ISSod1, transposase OrfB (NCBI ptt file), at 2,850,204 to 2,851,013 SO2734 Position (kb) 2849 2850 2851Strain fitness (log2 ratio) -1 0 1 2at 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.801 kb on - strandat 2849.802 kb on - strandat 2849.802 kb on - strandat 2851.088 kb on + strandat 2851.091 kb on + strandat 2851.104 kb on + strandat 2851.104 kb on + strandat 2851.104 kb on + strandat 2851.112 kb on - strandat 2851.112 kb on - strandat 2851.112 kb on - strandat 2851.122 kb on + strandat 2851.125 kb on - strandat 2851.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 50 mM
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2,849,801 - -0.9
2,849,801 - +0.3
2,849,801 - -0.4
2,849,801 - -1.1
2,849,801 - +0.1
2,849,801 - -0.0
2,849,801 - -0.2
2,849,801 - +0.6
2,849,801 - +0.5
2,849,802 - -0.7
2,849,802 - -0.6
2,851,088 + +0.8
2,851,091 + +0.8
2,851,104 + +1.1
2,851,104 + +1.1
2,851,104 + +0.8
2,851,112 - +1.2
2,851,112 - +1.2
2,851,112 - +1.9
2,851,122 + +0.0
2,851,125 - +0.8
2,851,130 - +1.3

Or see this region's nucleotide sequence