Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0197 and SO0198 are separated by 143 nucleotides SO0198 and SO0198.1 are separated by 282 nucleotides SO0198.1 and SO_0201 are separated by 66 nucleotides
SO0197: SO0197 - fatty acid desaturase, family 1 (NCBI ptt file), at 207,241 to 208,347
SO0197
SO0198: SO0198 - transcriptional regulator, TetR family (NCBI ptt file), at 208,491 to 209,105
SO0198
SO0198.1: SO0198.1 - putative transposase (NCBI ptt file), at 209,388 to 209,519
SO0198.1
SO_0201: SO_0201 - no description, at 209,586 to 210,287
_0201
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 207.656 kb on + strand, within SO0197 at 207.656 kb on + strand, within SO0197 at 207.667 kb on + strand, within SO0197 at 207.675 kb on - strand, within SO0197 at 207.675 kb on - strand, within SO0197 at 207.713 kb on + strand, within SO0197 at 207.721 kb on - strand, within SO0197 at 207.721 kb on - strand, within SO0197 at 207.736 kb on - strand, within SO0197 at 207.761 kb on + strand, within SO0197 at 207.767 kb on - strand, within SO0197 at 207.843 kb on - strand, within SO0197 at 207.850 kb on - strand, within SO0197 at 207.868 kb on - strand, within SO0197 at 207.876 kb on + strand, within SO0197 at 207.876 kb on + strand, within SO0197 at 207.933 kb on + strand, within SO0197 at 207.941 kb on - strand, within SO0197 at 207.947 kb on + strand, within SO0197 at 207.955 kb on - strand, within SO0197 at 207.961 kb on - strand, within SO0197 at 208.016 kb on + strand, within SO0197 at 208.024 kb on - strand, within SO0197 at 208.090 kb on + strand, within SO0197 at 208.147 kb on + strand, within SO0197 at 208.170 kb on + strand, within SO0197 at 208.177 kb on - strand, within SO0197 at 208.210 kb on + strand, within SO0197 at 208.210 kb on + strand, within SO0197 at 208.210 kb on + strand, within SO0197 at 208.210 kb on + strand, within SO0197 at 208.210 kb on + strand, within SO0197 at 208.218 kb on - strand, within SO0197 at 208.218 kb on - strand, within SO0197 at 208.218 kb on - strand, within SO0197 at 208.250 kb on + strand at 208.252 kb on - strand at 208.299 kb on - strand at 208.299 kb on - strand at 208.309 kb on - strand at 208.317 kb on + strand at 208.317 kb on + strand at 208.325 kb on - strand at 208.422 kb on + strand at 208.426 kb on - strand at 208.435 kb on - strand at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.561 kb on + strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.712 kb on + strand, within SO0198 at 208.737 kb on - strand, within SO0198 at 208.939 kb on + strand, within SO0198 at 208.945 kb on - strand, within SO0198 at 208.947 kb on - strand, within SO0198 at 209.006 kb on - strand, within SO0198 at 209.022 kb on - strand, within SO0198 at 209.099 kb on - strand at 209.163 kb on + strand at 209.195 kb on + strand at 209.253 kb on + strand at 209.261 kb on - strand at 209.261 kb on - strand at 209.281 kb on + strand at 209.281 kb on + strand at 209.352 kb on + strand at 209.352 kb on + strand at 209.424 kb on + strand, within SO0198.1 at 209.443 kb on - strand, within SO0198.1 at 209.523 kb on + strand at 209.531 kb on - strand at 209.543 kb on + strand at 209.566 kb on + strand at 209.571 kb on + strand at 209.574 kb on + strand at 209.579 kb on + strand at 209.610 kb on - strand at 209.708 kb on + strand, within SO_0201 at 209.765 kb on + strand, within SO_0201 at 209.824 kb on + strand, within SO_0201 at 209.832 kb on - strand, within SO_0201 at 209.832 kb on - strand, within SO_0201 at 209.887 kb on + strand, within SO_0201 at 209.960 kb on + strand, within SO_0201 at 209.997 kb on + strand, within SO_0201 at 209.997 kb on + strand, within SO_0201 at 210.005 kb on - strand, within SO_0201 at 210.005 kb on - strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.024 kb on - strand, within SO_0201
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 207,656 + SO0197 0.37 -0.3 207,656 + SO0197 0.37 -1.7 207,667 + SO0197 0.38 -0.8 207,675 - SO0197 0.39 -0.8 207,675 - SO0197 0.39 -0.3 207,713 + SO0197 0.43 +0.3 207,721 - SO0197 0.43 -0.4 207,721 - SO0197 0.43 +0.7 207,736 - SO0197 0.45 +0.4 207,761 + SO0197 0.47 +0.1 207,767 - SO0197 0.48 -0.6 207,843 - SO0197 0.54 +0.1 207,850 - SO0197 0.55 -0.1 207,868 - SO0197 0.57 -0.0 207,876 + SO0197 0.57 +0.6 207,876 + SO0197 0.57 -0.0 207,933 + SO0197 0.63 -0.7 207,941 - SO0197 0.63 +0.6 207,947 + SO0197 0.64 -0.5 207,955 - SO0197 0.64 +0.2 207,961 - SO0197 0.65 -0.4 208,016 + SO0197 0.70 -0.1 208,024 - SO0197 0.71 +0.7 208,090 + SO0197 0.77 +0.2 208,147 + SO0197 0.82 +0.4 208,170 + SO0197 0.84 +0.2 208,177 - SO0197 0.85 +0.2 208,210 + SO0197 0.88 -0.8 208,210 + SO0197 0.88 +0.4 208,210 + SO0197 0.88 +0.0 208,210 + SO0197 0.88 +0.4 208,210 + SO0197 0.88 -0.1 208,218 - SO0197 0.88 +0.1 208,218 - SO0197 0.88 -0.5 208,218 - SO0197 0.88 +0.5 208,250 + +0.2 208,252 - +1.0 208,299 - +0.5 208,299 - -0.1 208,309 - -0.7 208,317 + +0.7 208,317 + +0.5 208,325 - +0.3 208,422 + -0.5 208,426 - -0.4 208,435 - -0.3 208,556 + SO0198 0.11 -1.0 208,556 + SO0198 0.11 -1.5 208,556 + SO0198 0.11 -0.8 208,556 + SO0198 0.11 -3.0 208,556 + SO0198 0.11 -1.6 208,561 + SO0198 0.11 -0.9 208,564 - SO0198 0.12 -0.7 208,564 - SO0198 0.12 -0.8 208,564 - SO0198 0.12 -1.7 208,564 - SO0198 0.12 +0.0 208,564 - SO0198 0.12 -2.0 208,564 - SO0198 0.12 -1.2 208,564 - SO0198 0.12 -1.5 208,564 - SO0198 0.12 -1.0 208,564 - SO0198 0.12 +0.0 208,712 + SO0198 0.36 -1.3 208,737 - SO0198 0.40 -0.8 208,939 + SO0198 0.73 -1.3 208,945 - SO0198 0.74 -0.3 208,947 - SO0198 0.74 +0.7 209,006 - SO0198 0.84 -0.8 209,022 - SO0198 0.86 -3.3 209,099 - +0.3 209,163 + +0.4 209,195 + -0.2 209,253 + -0.2 209,261 - -0.4 209,261 - +0.5 209,281 + -0.4 209,281 + -0.7 209,352 + +0.2 209,352 + +0.2 209,424 + SO0198.1 0.27 +0.2 209,443 - SO0198.1 0.42 +0.5 209,523 + +0.3 209,531 - -1.0 209,543 + +0.6 209,566 + +1.1 209,571 + -0.2 209,574 + -0.2 209,579 + +0.0 209,610 - +0.2 209,708 + SO_0201 0.17 +0.3 209,765 + SO_0201 0.25 +0.0 209,824 + SO_0201 0.34 -0.5 209,832 - SO_0201 0.35 +0.8 209,832 - SO_0201 0.35 +0.0 209,887 + SO_0201 0.43 -0.0 209,960 + SO_0201 0.53 +0.1 209,997 + SO_0201 0.59 +0.1 209,997 + SO_0201 0.59 -0.2 210,005 - SO_0201 0.60 -0.2 210,005 - SO_0201 0.60 -0.1 210,016 + SO_0201 0.61 +0.5 210,016 + SO_0201 0.61 +1.4 210,016 + SO_0201 0.61 -0.5 210,016 + SO_0201 0.61 +0.6 210,024 - SO_0201 0.62 -0.2 210,024 - SO_0201 0.62 +0.5 210,024 - SO_0201 0.62 -0.2
Or see this region's nucleotide sequence