Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_872 and HP15_873 are separated by 14 nucleotides HP15_873 and HP15_874 are separated by 50 nucleotides HP15_874 and HP15_875 are separated by 86 nucleotides HP15_875 and HP15_876 are separated by 27 nucleotides
HP15_872: HP15_872 - nitroreductase-like protein, at 891,140 to 892,168
_872
HP15_873: HP15_873 - conserved hypothetical protein, at 892,183 to 892,563
_873
HP15_874: HP15_874 - intracellular protease, PfpI family, at 892,614 to 893,183
_874
HP15_875: HP15_875 - protein containing DUF159, at 893,270 to 893,983
_875
HP15_876: HP15_876 - class I peptide chain release factor, at 894,011 to 894,424
_876
Position (kb) 892
893
894 Strain fitness (log2 ratio) -1
0
1
2 at 891.638 kb on - strand, within HP15_872 at 891.658 kb on + strand, within HP15_872 at 891.711 kb on + strand, within HP15_872 at 891.738 kb on + strand, within HP15_872 at 891.789 kb on + strand, within HP15_872 at 891.797 kb on - strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.881 kb on - strand, within HP15_872 at 891.892 kb on + strand, within HP15_872 at 892.055 kb on - strand, within HP15_872 at 892.175 kb on - strand at 892.176 kb on + strand at 892.176 kb on + strand at 892.184 kb on - strand at 892.184 kb on - strand at 892.189 kb on - strand at 892.214 kb on + strand at 892.282 kb on + strand, within HP15_873 at 892.341 kb on - strand, within HP15_873 at 892.416 kb on + strand, within HP15_873 at 892.531 kb on - strand at 892.531 kb on - strand at 892.580 kb on - strand at 892.580 kb on - strand at 892.706 kb on + strand, within HP15_874 at 892.788 kb on + strand, within HP15_874 at 892.902 kb on + strand, within HP15_874 at 892.910 kb on - strand, within HP15_874 at 893.018 kb on - strand, within HP15_874 at 893.110 kb on + strand, within HP15_874 at 893.261 kb on + strand at 893.267 kb on + strand at 893.275 kb on - strand at 893.337 kb on + strand at 893.416 kb on + strand, within HP15_875 at 893.424 kb on - strand, within HP15_875 at 893.465 kb on + strand, within HP15_875 at 893.471 kb on - strand, within HP15_875 at 893.540 kb on - strand, within HP15_875 at 893.662 kb on + strand, within HP15_875 at 893.712 kb on - strand, within HP15_875 at 893.901 kb on - strand, within HP15_875 at 893.944 kb on - strand at 893.978 kb on + strand at 893.995 kb on + strand at 894.010 kb on - strand at 894.030 kb on + strand at 894.062 kb on + strand, within HP15_876 at 894.073 kb on + strand, within HP15_876 at 894.098 kb on - strand, within HP15_876
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 891,638 - HP15_872 0.48 -0.3 891,658 + HP15_872 0.50 +1.1 891,711 + HP15_872 0.55 -0.0 891,738 + HP15_872 0.58 +1.4 891,789 + HP15_872 0.63 -0.1 891,797 - HP15_872 0.64 -0.1 891,879 + HP15_872 0.72 +0.5 891,879 + HP15_872 0.72 +0.2 891,881 - HP15_872 0.72 +1.2 891,892 + HP15_872 0.73 -0.0 892,055 - HP15_872 0.89 -1.3 892,175 - -0.5 892,176 + +0.3 892,176 + +0.4 892,184 - -0.2 892,184 - +1.1 892,189 - -0.4 892,214 + +0.4 892,282 + HP15_873 0.26 +0.1 892,341 - HP15_873 0.41 +1.0 892,416 + HP15_873 0.61 -0.3 892,531 - -0.4 892,531 - +0.6 892,580 - -0.2 892,580 - +0.7 892,706 + HP15_874 0.16 +0.9 892,788 + HP15_874 0.31 -0.3 892,902 + HP15_874 0.51 -1.3 892,910 - HP15_874 0.52 -0.3 893,018 - HP15_874 0.71 -0.5 893,110 + HP15_874 0.87 +0.1 893,261 + +0.2 893,267 + +0.0 893,275 - -0.1 893,337 + +0.4 893,416 + HP15_875 0.20 +0.5 893,424 - HP15_875 0.22 +1.1 893,465 + HP15_875 0.27 -0.1 893,471 - HP15_875 0.28 +1.7 893,540 - HP15_875 0.38 -0.7 893,662 + HP15_875 0.55 -0.1 893,712 - HP15_875 0.62 +1.0 893,901 - HP15_875 0.88 +0.7 893,944 - +0.1 893,978 + +0.3 893,995 + +0.4 894,010 - +1.8 894,030 + +0.0 894,062 + HP15_876 0.12 +1.1 894,073 + HP15_876 0.15 -0.1 894,098 - HP15_876 0.21 +0.5
Or see this region's nucleotide sequence