Strain Fitness in Marinobacter adhaerens HP15 around HP15_4121

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4120 and HP15_4121 are separated by 323 nucleotidesHP15_4121 and HP15_4122 are separated by 109 nucleotidesHP15_4122 and HP15_4123 overlap by 1 nucleotides HP15_4120: HP15_4120 - secreted protein containing molybdopterin oxidoreductase / molybdopterin dinucleotide-binding region, at 4,354,441 to 4,357,326 _4120 HP15_4121: HP15_4121 - cytoplasmic chaperone TorD family protein, at 4,357,650 to 4,358,261 _4121 HP15_4122: HP15_4122 - conserved hypothetical protein, at 4,358,371 to 4,358,997 _4122 HP15_4123: HP15_4123 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 4,358,997 to 4,359,587 _4123 Position (kb) 4357 4358 4359Strain fitness (log2 ratio) -1 0 1 2at 4356.711 kb on - strand, within HP15_4120at 4356.726 kb on - strand, within HP15_4120at 4356.761 kb on - strand, within HP15_4120at 4356.805 kb on - strand, within HP15_4120at 4356.827 kb on - strand, within HP15_4120at 4356.902 kb on + strand, within HP15_4120at 4357.033 kb on + strand, within HP15_4120at 4357.074 kb on - strandat 4357.074 kb on - strandat 4357.095 kb on + strandat 4357.095 kb on + strandat 4357.103 kb on - strandat 4357.223 kb on - strandat 4357.234 kb on - strandat 4357.242 kb on + strandat 4357.243 kb on + strandat 4357.257 kb on - strandat 4357.304 kb on + strandat 4357.385 kb on - strandat 4357.385 kb on - strandat 4357.412 kb on - strandat 4357.440 kb on + strandat 4357.460 kb on - strandat 4357.485 kb on + strandat 4357.493 kb on - strandat 4357.637 kb on - strandat 4357.865 kb on + strand, within HP15_4121at 4357.992 kb on + strand, within HP15_4121at 4358.057 kb on + strand, within HP15_4121at 4358.426 kb on - strandat 4358.436 kb on - strand, within HP15_4122at 4358.490 kb on + strand, within HP15_4122at 4358.490 kb on + strand, within HP15_4122at 4358.498 kb on - strand, within HP15_4122at 4358.533 kb on - strand, within HP15_4122at 4358.630 kb on - strand, within HP15_4122at 4358.630 kb on - strand, within HP15_4122at 4358.678 kb on - strand, within HP15_4122at 4358.680 kb on - strand, within HP15_4122at 4358.699 kb on - strand, within HP15_4122at 4358.748 kb on - strand, within HP15_4122at 4358.748 kb on - strand, within HP15_4122at 4358.806 kb on - strand, within HP15_4122at 4358.875 kb on - strand, within HP15_4122at 4358.925 kb on - strand, within HP15_4122at 4358.925 kb on - strand, within HP15_4122at 4358.951 kb on + strandat 4359.158 kb on + strand, within HP15_4123at 4359.225 kb on - strand, within HP15_4123

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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4,356,711 - HP15_4120 0.79 +1.2
4,356,726 - HP15_4120 0.79 -1.3
4,356,761 - HP15_4120 0.80 +1.4
4,356,805 - HP15_4120 0.82 +1.0
4,356,827 - HP15_4120 0.83 +0.5
4,356,902 + HP15_4120 0.85 -0.6
4,357,033 + HP15_4120 0.90 -0.1
4,357,074 - +0.0
4,357,074 - -0.3
4,357,095 + -0.1
4,357,095 + -0.3
4,357,103 - -0.2
4,357,223 - +1.3
4,357,234 - -0.4
4,357,242 + +0.7
4,357,243 + -0.4
4,357,257 - -0.4
4,357,304 + +0.5
4,357,385 - +0.1
4,357,385 - -0.1
4,357,412 - -0.1
4,357,440 + -0.2
4,357,460 - -0.7
4,357,485 + +1.5
4,357,493 - +0.5
4,357,637 - +0.8
4,357,865 + HP15_4121 0.35 +2.2
4,357,992 + HP15_4121 0.56 -0.0
4,358,057 + HP15_4121 0.67 +0.8
4,358,426 - -0.5
4,358,436 - HP15_4122 0.10 +0.1
4,358,490 + HP15_4122 0.19 +0.1
4,358,490 + HP15_4122 0.19 +1.2
4,358,498 - HP15_4122 0.20 +0.9
4,358,533 - HP15_4122 0.26 +1.3
4,358,630 - HP15_4122 0.41 -0.1
4,358,630 - HP15_4122 0.41 +1.1
4,358,678 - HP15_4122 0.49 +1.2
4,358,680 - HP15_4122 0.49 +1.4
4,358,699 - HP15_4122 0.52 +1.4
4,358,748 - HP15_4122 0.60 -0.3
4,358,748 - HP15_4122 0.60 -0.1
4,358,806 - HP15_4122 0.69 +0.1
4,358,875 - HP15_4122 0.80 -0.3
4,358,925 - HP15_4122 0.88 +1.4
4,358,925 - HP15_4122 0.88 +0.0
4,358,951 + +0.0
4,359,158 + HP15_4123 0.27 +0.7
4,359,225 - HP15_4123 0.39 -0.2

Or see this region's nucleotide sequence