Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3964 and HP15_3965 are separated by 9 nucleotides HP15_3965 and HP15_3966 are separated by 1 nucleotides HP15_3966 and HP15_3967 are separated by 93 nucleotides
HP15_3964: HP15_3964 - glycosyl transferase, family 39, at 4,193,001 to 4,194,749
_3964
HP15_3965: HP15_3965 - membrane protein containing SNARE associated Golgi protein domain, at 4,194,759 to 4,195,427
_3965
HP15_3966: HP15_3966 - glycosyl transferase, group 2 family protein, at 4,195,429 to 4,196,196
_3966
HP15_3967: HP15_3967 - integral membrane sensor signal transduction histidine kinase, at 4,196,290 to 4,197,702
_3967
Position (kb)
4194
4195
4196 Strain fitness (log2 ratio)
-2
-1
0
1 at 4193.783 kb on - strand, within HP15_3964 at 4193.827 kb on + strand, within HP15_3964 at 4193.827 kb on + strand, within HP15_3964 at 4193.929 kb on - strand, within HP15_3964 at 4193.959 kb on + strand, within HP15_3964 at 4193.988 kb on - strand, within HP15_3964 at 4194.038 kb on + strand, within HP15_3964 at 4194.281 kb on + strand, within HP15_3964 at 4194.409 kb on - strand, within HP15_3964 at 4194.439 kb on + strand, within HP15_3964 at 4194.497 kb on - strand, within HP15_3964 at 4194.535 kb on + strand, within HP15_3964 at 4194.571 kb on - strand, within HP15_3964 at 4194.701 kb on + strand at 4194.720 kb on - strand at 4194.745 kb on + strand at 4194.753 kb on - strand at 4194.756 kb on + strand at 4194.756 kb on + strand at 4195.039 kb on + strand, within HP15_3965 at 4195.039 kb on - strand, within HP15_3965 at 4195.105 kb on - strand, within HP15_3965 at 4195.112 kb on - strand, within HP15_3965 at 4195.283 kb on + strand, within HP15_3965 at 4195.298 kb on + strand, within HP15_3965 at 4195.346 kb on + strand, within HP15_3965 at 4195.435 kb on - strand at 4195.470 kb on - strand at 4195.485 kb on - strand at 4195.485 kb on - strand at 4195.498 kb on + strand at 4195.554 kb on - strand, within HP15_3966 at 4195.583 kb on - strand, within HP15_3966 at 4195.861 kb on - strand, within HP15_3966 at 4195.938 kb on - strand, within HP15_3966 at 4195.961 kb on + strand, within HP15_3966 at 4196.005 kb on - strand, within HP15_3966 at 4196.017 kb on + strand, within HP15_3966 at 4196.025 kb on - strand, within HP15_3966 at 4196.090 kb on - strand, within HP15_3966 at 4196.090 kb on - strand, within HP15_3966 at 4196.117 kb on + strand, within HP15_3966 at 4196.193 kb on - strand at 4196.346 kb on + strand at 4196.346 kb on + strand at 4196.346 kb on + strand at 4196.376 kb on + strand at 4196.413 kb on + strand at 4196.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 4,193,783 - HP15_3964 0.45 +1.2 4,193,827 + HP15_3964 0.47 -0.6 4,193,827 + HP15_3964 0.47 +0.0 4,193,929 - HP15_3964 0.53 -0.5 4,193,959 + HP15_3964 0.55 -0.5 4,193,988 - HP15_3964 0.56 +0.3 4,194,038 + HP15_3964 0.59 -0.6 4,194,281 + HP15_3964 0.73 +1.5 4,194,409 - HP15_3964 0.81 -0.4 4,194,439 + HP15_3964 0.82 -0.1 4,194,497 - HP15_3964 0.86 -0.6 4,194,535 + HP15_3964 0.88 -0.2 4,194,571 - HP15_3964 0.90 +0.1 4,194,701 + +0.1 4,194,720 - +0.7 4,194,745 + +0.1 4,194,753 - -0.6 4,194,756 + -0.3 4,194,756 + -0.3 4,195,039 + HP15_3965 0.42 -0.3 4,195,039 - HP15_3965 0.42 +1.3 4,195,105 - HP15_3965 0.52 -0.8 4,195,112 - HP15_3965 0.53 -0.3 4,195,283 + HP15_3965 0.78 -0.8 4,195,298 + HP15_3965 0.81 -0.2 4,195,346 + HP15_3965 0.88 +1.4 4,195,435 - +0.6 4,195,470 - +1.0 4,195,485 - -0.2 4,195,485 - -0.1 4,195,498 + +0.0 4,195,554 - HP15_3966 0.16 +0.8 4,195,583 - HP15_3966 0.20 -0.9 4,195,861 - HP15_3966 0.56 -0.3 4,195,938 - HP15_3966 0.66 -1.9 4,195,961 + HP15_3966 0.69 -0.2 4,196,005 - HP15_3966 0.75 -0.1 4,196,017 + HP15_3966 0.77 +1.3 4,196,025 - HP15_3966 0.78 +0.8 4,196,090 - HP15_3966 0.86 +0.2 4,196,090 - HP15_3966 0.86 +1.0 4,196,117 + HP15_3966 0.90 +1.4 4,196,193 - -0.3 4,196,346 + +0.8 4,196,346 + -0.3 4,196,346 + -0.5 4,196,376 + +0.6 4,196,413 + +0.4 4,196,425 + -0.2
Or see this region's nucleotide sequence