Strain Fitness in Marinobacter adhaerens HP15 around HP15_2676

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2674 and HP15_2675 are separated by 55 nucleotidesHP15_2675 and HP15_2676 are separated by 146 nucleotidesHP15_2676 and HP15_2677 are separated by 35 nucleotidesHP15_2677 and HP15_2678 are separated by 78 nucleotides HP15_2674: HP15_2674 - conserved hypothetical protein, at 2,823,821 to 2,824,060 _2674 HP15_2675: HP15_2675 - pseudouridine synthase, Rsu, at 2,824,116 to 2,824,814 _2675 HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241 _2676 HP15_2677: HP15_2677 - conserved hypothetical protein, secreted, at 2,826,277 to 2,826,753 _2677 HP15_2678: HP15_2678 - shikimate kinase, at 2,826,832 to 2,827,356 _2678 Position (kb) 2824 2825 2826 2827Strain fitness (log2 ratio) -1 0 1 2 3at 2823.979 kb on - strand, within HP15_2674at 2824.310 kb on + strand, within HP15_2675at 2824.378 kb on + strand, within HP15_2675at 2824.378 kb on + strand, within HP15_2675at 2824.378 kb on + strand, within HP15_2675at 2824.386 kb on - strand, within HP15_2675at 2824.386 kb on - strand, within HP15_2675at 2824.434 kb on + strand, within HP15_2675at 2824.473 kb on - strand, within HP15_2675at 2824.514 kb on + strand, within HP15_2675at 2824.514 kb on + strand, within HP15_2675at 2824.606 kb on - strand, within HP15_2675at 2824.718 kb on - strand, within HP15_2675at 2824.772 kb on - strandat 2824.806 kb on - strandat 2824.890 kb on - strandat 2824.977 kb on + strandat 2824.977 kb on + strandat 2824.985 kb on - strandat 2825.026 kb on + strandat 2825.096 kb on + strand, within HP15_2676at 2825.213 kb on - strand, within HP15_2676at 2825.247 kb on - strand, within HP15_2676at 2825.303 kb on + strand, within HP15_2676at 2825.335 kb on - strand, within HP15_2676at 2825.374 kb on + strand, within HP15_2676at 2825.374 kb on + strand, within HP15_2676at 2825.382 kb on - strand, within HP15_2676at 2825.382 kb on - strand, within HP15_2676at 2825.403 kb on - strandat 2825.477 kb on - strand, within HP15_2676at 2825.519 kb on - strand, within HP15_2676at 2825.552 kb on + strand, within HP15_2676at 2825.560 kb on - strand, within HP15_2676at 2825.726 kb on + strand, within HP15_2676at 2825.828 kb on + strand, within HP15_2676at 2825.834 kb on - strand, within HP15_2676at 2825.846 kb on - strand, within HP15_2676at 2825.914 kb on + strand, within HP15_2676at 2825.917 kb on - strand, within HP15_2676at 2825.917 kb on - strand, within HP15_2676at 2825.922 kb on - strand, within HP15_2676at 2825.922 kb on - strand, within HP15_2676at 2826.064 kb on + strand, within HP15_2676at 2826.101 kb on - strand, within HP15_2676at 2826.103 kb on + strand, within HP15_2676at 2826.103 kb on + strand, within HP15_2676at 2826.111 kb on - strand, within HP15_2676at 2826.111 kb on - strand, within HP15_2676at 2826.143 kb on + strandat 2826.283 kb on - strandat 2826.307 kb on + strandat 2826.610 kb on - strand, within HP15_2677at 2826.638 kb on - strand, within HP15_2677at 2826.688 kb on - strand, within HP15_2677at 2826.690 kb on + strand, within HP15_2677at 2826.864 kb on - strandat 2827.034 kb on - strand, within HP15_2678at 2827.064 kb on + strand, within HP15_2678at 2827.082 kb on - strand, within HP15_2678at 2827.090 kb on + strand, within HP15_2678at 2827.191 kb on + strand, within HP15_2678

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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2,823,979 - HP15_2674 0.66 -0.8
2,824,310 + HP15_2675 0.28 -0.0
2,824,378 + HP15_2675 0.37 +1.4
2,824,378 + HP15_2675 0.37 +0.7
2,824,378 + HP15_2675 0.37 -0.3
2,824,386 - HP15_2675 0.39 +0.6
2,824,386 - HP15_2675 0.39 -0.1
2,824,434 + HP15_2675 0.45 +1.3
2,824,473 - HP15_2675 0.51 -0.3
2,824,514 + HP15_2675 0.57 +0.1
2,824,514 + HP15_2675 0.57 +1.0
2,824,606 - HP15_2675 0.70 +0.2
2,824,718 - HP15_2675 0.86 +0.2
2,824,772 - -0.1
2,824,806 - -0.4
2,824,890 - -0.3
2,824,977 + -0.4
2,824,977 + -0.1
2,824,985 - +0.5
2,825,026 + -0.1
2,825,096 + HP15_2676 0.11 +1.1
2,825,213 - HP15_2676 0.20 -0.4
2,825,247 - HP15_2676 0.22 -1.0
2,825,303 + HP15_2676 0.27 +1.6
2,825,335 - HP15_2676 0.29 -0.0
2,825,374 + HP15_2676 0.32 -1.2
2,825,374 + HP15_2676 0.32 -0.4
2,825,382 - HP15_2676 0.33 +0.1
2,825,382 - HP15_2676 0.33 +2.4
2,825,403 - +0.2
2,825,477 - HP15_2676 0.40 +0.6
2,825,519 - HP15_2676 0.44 -0.4
2,825,552 + HP15_2676 0.46 -0.2
2,825,560 - HP15_2676 0.47 +0.2
2,825,726 + HP15_2676 0.60 -0.2
2,825,828 + HP15_2676 0.68 +1.1
2,825,834 - HP15_2676 0.68 +2.8
2,825,846 - HP15_2676 0.69 +1.7
2,825,914 + HP15_2676 0.74 +0.6
2,825,917 - HP15_2676 0.75 +1.2
2,825,917 - HP15_2676 0.75 +1.9
2,825,922 - HP15_2676 0.75 -0.1
2,825,922 - HP15_2676 0.75 +0.5
2,826,064 + HP15_2676 0.86 +1.4
2,826,101 - HP15_2676 0.89 +0.1
2,826,103 + HP15_2676 0.89 -0.1
2,826,103 + HP15_2676 0.89 -0.2
2,826,111 - HP15_2676 0.90 -0.1
2,826,111 - HP15_2676 0.90 -0.4
2,826,143 + -0.5
2,826,283 - -0.0
2,826,307 + -0.2
2,826,610 - HP15_2677 0.70 -0.2
2,826,638 - HP15_2677 0.76 +0.3
2,826,688 - HP15_2677 0.86 +0.4
2,826,690 + HP15_2677 0.87 -0.1
2,826,864 - -0.4
2,827,034 - HP15_2678 0.38 +1.7
2,827,064 + HP15_2678 0.44 +0.2
2,827,082 - HP15_2678 0.48 +0.4
2,827,090 + HP15_2678 0.49 -0.1
2,827,191 + HP15_2678 0.68 +0.0

Or see this region's nucleotide sequence