Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2674 and HP15_2675 are separated by 55 nucleotides HP15_2675 and HP15_2676 are separated by 146 nucleotides HP15_2676 and HP15_2677 are separated by 35 nucleotides HP15_2677 and HP15_2678 are separated by 78 nucleotides
HP15_2674: HP15_2674 - conserved hypothetical protein, at 2,823,821 to 2,824,060
_2674
HP15_2675: HP15_2675 - pseudouridine synthase, Rsu, at 2,824,116 to 2,824,814
_2675
HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241
_2676
HP15_2677: HP15_2677 - conserved hypothetical protein, secreted, at 2,826,277 to 2,826,753
_2677
HP15_2678: HP15_2678 - shikimate kinase, at 2,826,832 to 2,827,356
_2678
Position (kb)
2824
2825
2826
2827 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2823.979 kb on - strand, within HP15_2674 at 2824.310 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.378 kb on + strand, within HP15_2675 at 2824.386 kb on - strand, within HP15_2675 at 2824.386 kb on - strand, within HP15_2675 at 2824.434 kb on + strand, within HP15_2675 at 2824.473 kb on - strand, within HP15_2675 at 2824.514 kb on + strand, within HP15_2675 at 2824.514 kb on + strand, within HP15_2675 at 2824.606 kb on - strand, within HP15_2675 at 2824.718 kb on - strand, within HP15_2675 at 2824.772 kb on - strand at 2824.806 kb on - strand at 2824.890 kb on - strand at 2824.977 kb on + strand at 2824.977 kb on + strand at 2824.985 kb on - strand at 2825.026 kb on + strand at 2825.096 kb on + strand, within HP15_2676 at 2825.213 kb on - strand, within HP15_2676 at 2825.247 kb on - strand, within HP15_2676 at 2825.303 kb on + strand, within HP15_2676 at 2825.335 kb on - strand, within HP15_2676 at 2825.374 kb on + strand, within HP15_2676 at 2825.374 kb on + strand, within HP15_2676 at 2825.382 kb on - strand, within HP15_2676 at 2825.382 kb on - strand, within HP15_2676 at 2825.403 kb on - strand at 2825.477 kb on - strand, within HP15_2676 at 2825.519 kb on - strand, within HP15_2676 at 2825.552 kb on + strand, within HP15_2676 at 2825.560 kb on - strand, within HP15_2676 at 2825.726 kb on + strand, within HP15_2676 at 2825.828 kb on + strand, within HP15_2676 at 2825.834 kb on - strand, within HP15_2676 at 2825.846 kb on - strand, within HP15_2676 at 2825.914 kb on + strand, within HP15_2676 at 2825.917 kb on - strand, within HP15_2676 at 2825.917 kb on - strand, within HP15_2676 at 2825.922 kb on - strand, within HP15_2676 at 2825.922 kb on - strand, within HP15_2676 at 2826.064 kb on + strand, within HP15_2676 at 2826.101 kb on - strand, within HP15_2676 at 2826.103 kb on + strand, within HP15_2676 at 2826.103 kb on + strand, within HP15_2676 at 2826.111 kb on - strand, within HP15_2676 at 2826.111 kb on - strand, within HP15_2676 at 2826.143 kb on + strand at 2826.283 kb on - strand at 2826.307 kb on + strand at 2826.610 kb on - strand, within HP15_2677 at 2826.638 kb on - strand, within HP15_2677 at 2826.688 kb on - strand, within HP15_2677 at 2826.690 kb on + strand, within HP15_2677 at 2826.864 kb on - strand at 2827.034 kb on - strand, within HP15_2678 at 2827.064 kb on + strand, within HP15_2678 at 2827.082 kb on - strand, within HP15_2678 at 2827.090 kb on + strand, within HP15_2678 at 2827.191 kb on + strand, within HP15_2678
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 2,823,979 - HP15_2674 0.66 -0.8 2,824,310 + HP15_2675 0.28 -0.0 2,824,378 + HP15_2675 0.37 +1.4 2,824,378 + HP15_2675 0.37 +0.7 2,824,378 + HP15_2675 0.37 -0.3 2,824,386 - HP15_2675 0.39 +0.6 2,824,386 - HP15_2675 0.39 -0.1 2,824,434 + HP15_2675 0.45 +1.3 2,824,473 - HP15_2675 0.51 -0.3 2,824,514 + HP15_2675 0.57 +0.1 2,824,514 + HP15_2675 0.57 +1.0 2,824,606 - HP15_2675 0.70 +0.2 2,824,718 - HP15_2675 0.86 +0.2 2,824,772 - -0.1 2,824,806 - -0.4 2,824,890 - -0.3 2,824,977 + -0.4 2,824,977 + -0.1 2,824,985 - +0.5 2,825,026 + -0.1 2,825,096 + HP15_2676 0.11 +1.1 2,825,213 - HP15_2676 0.20 -0.4 2,825,247 - HP15_2676 0.22 -1.0 2,825,303 + HP15_2676 0.27 +1.6 2,825,335 - HP15_2676 0.29 -0.0 2,825,374 + HP15_2676 0.32 -1.2 2,825,374 + HP15_2676 0.32 -0.4 2,825,382 - HP15_2676 0.33 +0.1 2,825,382 - HP15_2676 0.33 +2.4 2,825,403 - +0.2 2,825,477 - HP15_2676 0.40 +0.6 2,825,519 - HP15_2676 0.44 -0.4 2,825,552 + HP15_2676 0.46 -0.2 2,825,560 - HP15_2676 0.47 +0.2 2,825,726 + HP15_2676 0.60 -0.2 2,825,828 + HP15_2676 0.68 +1.1 2,825,834 - HP15_2676 0.68 +2.8 2,825,846 - HP15_2676 0.69 +1.7 2,825,914 + HP15_2676 0.74 +0.6 2,825,917 - HP15_2676 0.75 +1.2 2,825,917 - HP15_2676 0.75 +1.9 2,825,922 - HP15_2676 0.75 -0.1 2,825,922 - HP15_2676 0.75 +0.5 2,826,064 + HP15_2676 0.86 +1.4 2,826,101 - HP15_2676 0.89 +0.1 2,826,103 + HP15_2676 0.89 -0.1 2,826,103 + HP15_2676 0.89 -0.2 2,826,111 - HP15_2676 0.90 -0.1 2,826,111 - HP15_2676 0.90 -0.4 2,826,143 + -0.5 2,826,283 - -0.0 2,826,307 + -0.2 2,826,610 - HP15_2677 0.70 -0.2 2,826,638 - HP15_2677 0.76 +0.3 2,826,688 - HP15_2677 0.86 +0.4 2,826,690 + HP15_2677 0.87 -0.1 2,826,864 - -0.4 2,827,034 - HP15_2678 0.38 +1.7 2,827,064 + HP15_2678 0.44 +0.2 2,827,082 - HP15_2678 0.48 +0.4 2,827,090 + HP15_2678 0.49 -0.1 2,827,191 + HP15_2678 0.68 +0.0
Or see this region's nucleotide sequence