Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2260 and HP15_2261 are separated by 24 nucleotides HP15_2261 and HP15_2262 are separated by 55 nucleotides HP15_2262 and HP15_2263 are separated by 60 nucleotides
HP15_2260: HP15_2260 - small-conductance mechanosensitive channel, at 2,381,576 to 2,382,799
_2260
HP15_2261: HP15_2261 - ErfK/YbiS/YcfS/YnhG family protein, at 2,382,824 to 2,383,318
_2261
HP15_2262: HP15_2262 - transcriptional Regulator, TetR family protein, at 2,383,374 to 2,384,051
_2262
HP15_2263: HP15_2263 - conserved hypothetical protein, membrane, at 2,384,112 to 2,384,915
_2263
Position (kb)
2382
2383
2384 Strain fitness (log2 ratio)
-2
-1
0
1 at 2381.824 kb on + strand, within HP15_2260 at 2381.926 kb on + strand, within HP15_2260 at 2382.032 kb on - strand, within HP15_2260 at 2382.157 kb on + strand, within HP15_2260 at 2382.298 kb on + strand, within HP15_2260 at 2382.318 kb on - strand, within HP15_2260 at 2382.327 kb on + strand, within HP15_2260 at 2382.385 kb on - strand, within HP15_2260 at 2382.451 kb on - strand, within HP15_2260 at 2382.453 kb on + strand, within HP15_2260 at 2382.461 kb on - strand, within HP15_2260 at 2382.471 kb on - strand, within HP15_2260 at 2382.490 kb on - strand, within HP15_2260 at 2382.536 kb on + strand, within HP15_2260 at 2382.546 kb on + strand, within HP15_2260 at 2382.555 kb on + strand, within HP15_2260 at 2382.610 kb on - strand, within HP15_2260 at 2382.623 kb on - strand, within HP15_2260 at 2382.624 kb on + strand, within HP15_2260 at 2382.814 kb on - strand at 2382.819 kb on - strand at 2382.821 kb on + strand at 2383.321 kb on - strand at 2383.389 kb on - strand at 2383.508 kb on + strand, within HP15_2262 at 2383.806 kb on - strand, within HP15_2262 at 2383.937 kb on + strand, within HP15_2262 at 2383.996 kb on + strand at 2384.151 kb on + strand at 2384.210 kb on - strand, within HP15_2263
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 2,381,824 + HP15_2260 0.20 -0.1 2,381,926 + HP15_2260 0.29 +0.9 2,382,032 - HP15_2260 0.37 -2.3 2,382,157 + HP15_2260 0.47 -0.3 2,382,298 + HP15_2260 0.59 -0.6 2,382,318 - HP15_2260 0.61 +0.4 2,382,327 + HP15_2260 0.61 +0.1 2,382,385 - HP15_2260 0.66 -0.2 2,382,451 - HP15_2260 0.71 +0.2 2,382,453 + HP15_2260 0.72 +0.2 2,382,461 - HP15_2260 0.72 +0.8 2,382,471 - HP15_2260 0.73 -0.1 2,382,490 - HP15_2260 0.75 +1.0 2,382,536 + HP15_2260 0.78 -0.0 2,382,546 + HP15_2260 0.79 -0.5 2,382,555 + HP15_2260 0.80 -0.6 2,382,610 - HP15_2260 0.84 -0.5 2,382,623 - HP15_2260 0.86 +0.5 2,382,624 + HP15_2260 0.86 +0.5 2,382,814 - +1.3 2,382,819 - -0.5 2,382,821 + -0.7 2,383,321 - -0.4 2,383,389 - +0.9 2,383,508 + HP15_2262 0.20 +0.6 2,383,806 - HP15_2262 0.64 -0.9 2,383,937 + HP15_2262 0.83 +1.0 2,383,996 + +0.9 2,384,151 + +1.4 2,384,210 - HP15_2263 0.12 +0.8
Or see this region's nucleotide sequence