Strain Fitness in Marinobacter adhaerens HP15 around HP15_2055

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2053 and HP15_2054 are separated by 316 nucleotidesHP15_2054 and HP15_2055 are separated by 92 nucleotidesHP15_2055 and HP15_2056 are separated by 145 nucleotidesHP15_2056 and HP15_2057 are separated by 1 nucleotides HP15_2053: HP15_2053 - PrpE protein, at 2,153,144 to 2,155,018 _2053 HP15_2054: HP15_2054 - cold shock, CspA, at 2,155,335 to 2,155,544 _2054 HP15_2055: HP15_2055 - 2-isopropylmalate synthase, at 2,155,637 to 2,157,331 _2055 HP15_2056: HP15_2056 - transcriptional regulator of AsnC/Lrp family protein, at 2,157,477 to 2,157,974 _2056 HP15_2057: HP15_2057 - transcriptional regulator, TetR family, at 2,157,976 to 2,158,632 _2057 Position (kb) 2155 2156 2157 2158Strain fitness (log2 ratio) -1 0 1 2at 2154.825 kb on - strand, within HP15_2053at 2154.887 kb on + strandat 2154.895 kb on - strandat 2154.974 kb on - strandat 2155.366 kb on + strand, within HP15_2054at 2155.366 kb on + strand, within HP15_2054at 2155.384 kb on - strand, within HP15_2054at 2155.466 kb on + strand, within HP15_2054at 2155.568 kb on - strandat 2155.700 kb on - strandat 2155.704 kb on + strandat 2155.712 kb on - strandat 2155.786 kb on + strandat 2155.799 kb on - strandat 2155.818 kb on + strand, within HP15_2055at 2155.903 kb on - strand, within HP15_2055at 2155.920 kb on - strand, within HP15_2055at 2156.107 kb on - strand, within HP15_2055at 2156.109 kb on + strand, within HP15_2055at 2156.117 kb on - strand, within HP15_2055at 2156.125 kb on + strand, within HP15_2055at 2156.162 kb on + strand, within HP15_2055at 2156.186 kb on - strand, within HP15_2055at 2156.191 kb on - strand, within HP15_2055at 2156.191 kb on - strand, within HP15_2055at 2156.317 kb on + strand, within HP15_2055at 2156.325 kb on - strand, within HP15_2055at 2156.345 kb on + strand, within HP15_2055at 2156.397 kb on + strand, within HP15_2055at 2156.468 kb on - strand, within HP15_2055at 2156.585 kb on + strand, within HP15_2055at 2156.621 kb on - strand, within HP15_2055at 2156.705 kb on - strand, within HP15_2055at 2156.739 kb on + strand, within HP15_2055at 2156.866 kb on + strand, within HP15_2055at 2157.026 kb on + strand, within HP15_2055at 2157.200 kb on - strandat 2157.328 kb on - strandat 2157.772 kb on + strand, within HP15_2056at 2157.780 kb on + strand, within HP15_2056at 2157.788 kb on - strand, within HP15_2056at 2157.788 kb on - strand, within HP15_2056at 2157.946 kb on - strandat 2157.951 kb on - strandat 2157.951 kb on - strandat 2158.013 kb on + strandat 2158.013 kb on + strandat 2158.013 kb on + strandat 2158.189 kb on - strand, within HP15_2057at 2158.232 kb on - strand, within HP15_2057at 2158.322 kb on - strand, within HP15_2057

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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2,154,825 - HP15_2053 0.90 +1.6
2,154,887 + -0.1
2,154,895 - -0.9
2,154,974 - -0.4
2,155,366 + HP15_2054 0.15 -0.1
2,155,366 + HP15_2054 0.15 +0.5
2,155,384 - HP15_2054 0.23 +0.5
2,155,466 + HP15_2054 0.62 +1.4
2,155,568 - -0.0
2,155,700 - +1.3
2,155,704 + +0.3
2,155,712 - -0.3
2,155,786 + +0.2
2,155,799 - +0.6
2,155,818 + HP15_2055 0.11 +0.2
2,155,903 - HP15_2055 0.16 +1.5
2,155,920 - HP15_2055 0.17 +0.0
2,156,107 - HP15_2055 0.28 -0.7
2,156,109 + HP15_2055 0.28 -0.2
2,156,117 - HP15_2055 0.28 -0.8
2,156,125 + HP15_2055 0.29 -0.3
2,156,162 + HP15_2055 0.31 +0.2
2,156,186 - HP15_2055 0.32 -0.9
2,156,191 - HP15_2055 0.33 -0.5
2,156,191 - HP15_2055 0.33 -0.9
2,156,317 + HP15_2055 0.40 -0.6
2,156,325 - HP15_2055 0.41 -1.5
2,156,345 + HP15_2055 0.42 -0.5
2,156,397 + HP15_2055 0.45 -1.4
2,156,468 - HP15_2055 0.49 -1.0
2,156,585 + HP15_2055 0.56 +0.5
2,156,621 - HP15_2055 0.58 -0.3
2,156,705 - HP15_2055 0.63 -1.0
2,156,739 + HP15_2055 0.65 +0.2
2,156,866 + HP15_2055 0.73 +0.1
2,157,026 + HP15_2055 0.82 -0.5
2,157,200 - +0.3
2,157,328 - -1.3
2,157,772 + HP15_2056 0.59 -0.6
2,157,780 + HP15_2056 0.61 -0.8
2,157,788 - HP15_2056 0.62 +0.2
2,157,788 - HP15_2056 0.62 +0.1
2,157,946 - +0.6
2,157,951 - -0.3
2,157,951 - +1.3
2,158,013 + +0.0
2,158,013 + +1.2
2,158,013 + +0.3
2,158,189 - HP15_2057 0.32 +0.7
2,158,232 - HP15_2057 0.39 -1.1
2,158,322 - HP15_2057 0.53 +2.5

Or see this region's nucleotide sequence