Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2053 and HP15_2054 are separated by 316 nucleotides HP15_2054 and HP15_2055 are separated by 92 nucleotides HP15_2055 and HP15_2056 are separated by 145 nucleotides HP15_2056 and HP15_2057 are separated by 1 nucleotides
HP15_2053: HP15_2053 - PrpE protein, at 2,153,144 to 2,155,018
_2053
HP15_2054: HP15_2054 - cold shock, CspA, at 2,155,335 to 2,155,544
_2054
HP15_2055: HP15_2055 - 2-isopropylmalate synthase, at 2,155,637 to 2,157,331
_2055
HP15_2056: HP15_2056 - transcriptional regulator of AsnC/Lrp family protein, at 2,157,477 to 2,157,974
_2056
HP15_2057: HP15_2057 - transcriptional regulator, TetR family, at 2,157,976 to 2,158,632
_2057
Position (kb)
2155
2156
2157
2158 Strain fitness (log2 ratio)
-1
0
1
2 at 2154.825 kb on - strand, within HP15_2053 at 2154.887 kb on + strand at 2154.895 kb on - strand at 2154.974 kb on - strand at 2155.366 kb on + strand, within HP15_2054 at 2155.366 kb on + strand, within HP15_2054 at 2155.384 kb on - strand, within HP15_2054 at 2155.466 kb on + strand, within HP15_2054 at 2155.568 kb on - strand at 2155.700 kb on - strand at 2155.704 kb on + strand at 2155.712 kb on - strand at 2155.786 kb on + strand at 2155.799 kb on - strand at 2155.818 kb on + strand, within HP15_2055 at 2155.903 kb on - strand, within HP15_2055 at 2155.920 kb on - strand, within HP15_2055 at 2156.107 kb on - strand, within HP15_2055 at 2156.109 kb on + strand, within HP15_2055 at 2156.117 kb on - strand, within HP15_2055 at 2156.125 kb on + strand, within HP15_2055 at 2156.162 kb on + strand, within HP15_2055 at 2156.186 kb on - strand, within HP15_2055 at 2156.191 kb on - strand, within HP15_2055 at 2156.191 kb on - strand, within HP15_2055 at 2156.317 kb on + strand, within HP15_2055 at 2156.325 kb on - strand, within HP15_2055 at 2156.345 kb on + strand, within HP15_2055 at 2156.397 kb on + strand, within HP15_2055 at 2156.468 kb on - strand, within HP15_2055 at 2156.585 kb on + strand, within HP15_2055 at 2156.621 kb on - strand, within HP15_2055 at 2156.705 kb on - strand, within HP15_2055 at 2156.739 kb on + strand, within HP15_2055 at 2156.866 kb on + strand, within HP15_2055 at 2157.026 kb on + strand, within HP15_2055 at 2157.200 kb on - strand at 2157.328 kb on - strand at 2157.772 kb on + strand, within HP15_2056 at 2157.780 kb on + strand, within HP15_2056 at 2157.788 kb on - strand, within HP15_2056 at 2157.788 kb on - strand, within HP15_2056 at 2157.946 kb on - strand at 2157.951 kb on - strand at 2157.951 kb on - strand at 2158.013 kb on + strand at 2158.013 kb on + strand at 2158.013 kb on + strand at 2158.189 kb on - strand, within HP15_2057 at 2158.232 kb on - strand, within HP15_2057 at 2158.322 kb on - strand, within HP15_2057
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 2,154,825 - HP15_2053 0.90 +1.6 2,154,887 + -0.1 2,154,895 - -0.9 2,154,974 - -0.4 2,155,366 + HP15_2054 0.15 -0.1 2,155,366 + HP15_2054 0.15 +0.5 2,155,384 - HP15_2054 0.23 +0.5 2,155,466 + HP15_2054 0.62 +1.4 2,155,568 - -0.0 2,155,700 - +1.3 2,155,704 + +0.3 2,155,712 - -0.3 2,155,786 + +0.2 2,155,799 - +0.6 2,155,818 + HP15_2055 0.11 +0.2 2,155,903 - HP15_2055 0.16 +1.5 2,155,920 - HP15_2055 0.17 +0.0 2,156,107 - HP15_2055 0.28 -0.7 2,156,109 + HP15_2055 0.28 -0.2 2,156,117 - HP15_2055 0.28 -0.8 2,156,125 + HP15_2055 0.29 -0.3 2,156,162 + HP15_2055 0.31 +0.2 2,156,186 - HP15_2055 0.32 -0.9 2,156,191 - HP15_2055 0.33 -0.5 2,156,191 - HP15_2055 0.33 -0.9 2,156,317 + HP15_2055 0.40 -0.6 2,156,325 - HP15_2055 0.41 -1.5 2,156,345 + HP15_2055 0.42 -0.5 2,156,397 + HP15_2055 0.45 -1.4 2,156,468 - HP15_2055 0.49 -1.0 2,156,585 + HP15_2055 0.56 +0.5 2,156,621 - HP15_2055 0.58 -0.3 2,156,705 - HP15_2055 0.63 -1.0 2,156,739 + HP15_2055 0.65 +0.2 2,156,866 + HP15_2055 0.73 +0.1 2,157,026 + HP15_2055 0.82 -0.5 2,157,200 - +0.3 2,157,328 - -1.3 2,157,772 + HP15_2056 0.59 -0.6 2,157,780 + HP15_2056 0.61 -0.8 2,157,788 - HP15_2056 0.62 +0.2 2,157,788 - HP15_2056 0.62 +0.1 2,157,946 - +0.6 2,157,951 - -0.3 2,157,951 - +1.3 2,158,013 + +0.0 2,158,013 + +1.2 2,158,013 + +0.3 2,158,189 - HP15_2057 0.32 +0.7 2,158,232 - HP15_2057 0.39 -1.1 2,158,322 - HP15_2057 0.53 +2.5
Or see this region's nucleotide sequence