Strain Fitness in Marinobacter adhaerens HP15 around HP15_2050

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2048 and HP15_2049 are separated by 9 nucleotidesHP15_2049 and HP15_2050 are separated by 20 nucleotidesHP15_2050 and HP15_2051 are separated by 62 nucleotides HP15_2048: HP15_2048 - UDP-glucose 4-epimerase, at 2,146,794 to 2,147,822 _2048 HP15_2049: HP15_2049 - cytidine/deoxycytidylate deaminase family protein, at 2,147,832 to 2,148,335 _2049 HP15_2050: HP15_2050 - bifunctional GMP synthase/glutamine amidotransferase protein, at 2,148,356 to 2,149,933 _2050 HP15_2051: HP15_2051 - inositol-5-monophosphate dehydrogenase, at 2,149,996 to 2,151,459 _2051 Position (kb) 2148 2149 2150Strain fitness (log2 ratio) -2 -1 0 1at 2147.376 kb on - strand, within HP15_2048at 2147.537 kb on - strand, within HP15_2048at 2147.537 kb on - strand, within HP15_2048at 2147.719 kb on + strand, within HP15_2048

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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2,147,376 - HP15_2048 0.57 -1.8
2,147,537 - HP15_2048 0.72 -0.8
2,147,537 - HP15_2048 0.72 +0.1
2,147,719 + HP15_2048 0.90 -0.2

Or see this region's nucleotide sequence