Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1913 and HP15_1914 overlap by 4 nucleotides HP15_1914 and HP15_1915 are separated by 2 nucleotides
HP15_1913: HP15_1913 - glycosyltransferase, at 2,026,798 to 2,027,919
_1913
HP15_1914: HP15_1914 - asparagine synthase, glutamine-hydrolyzing, at 2,027,916 to 2,029,814
_1914
HP15_1915: HP15_1915 - glycosyl transferase, group 1, at 2,029,817 to 2,030,968
_1915
Position (kb)
2027
2028
2029
2030 Strain fitness (log2 ratio)
-1
0
1 at 2026.916 kb on - strand, within HP15_1913 at 2027.022 kb on - strand, within HP15_1913 at 2027.048 kb on + strand, within HP15_1913 at 2027.124 kb on - strand, within HP15_1913 at 2027.133 kb on - strand, within HP15_1913 at 2027.148 kb on + strand, within HP15_1913 at 2027.296 kb on - strand, within HP15_1913 at 2027.350 kb on + strand, within HP15_1913 at 2027.355 kb on + strand, within HP15_1913 at 2027.358 kb on - strand, within HP15_1913 at 2027.399 kb on - strand, within HP15_1913 at 2027.491 kb on + strand, within HP15_1913 at 2027.501 kb on - strand, within HP15_1913 at 2027.506 kb on - strand, within HP15_1913 at 2027.542 kb on - strand at 2027.617 kb on + strand, within HP15_1913 at 2027.625 kb on - strand, within HP15_1913 at 2027.652 kb on - strand, within HP15_1913 at 2027.726 kb on - strand, within HP15_1913 at 2027.856 kb on + strand at 2027.976 kb on - strand at 2028.005 kb on + strand at 2028.027 kb on + strand at 2028.225 kb on - strand, within HP15_1914 at 2028.322 kb on + strand, within HP15_1914 at 2028.587 kb on + strand, within HP15_1914 at 2028.803 kb on + strand, within HP15_1914 at 2028.968 kb on - strand, within HP15_1914 at 2028.987 kb on + strand, within HP15_1914 at 2029.109 kb on + strand, within HP15_1914 at 2029.121 kb on + strand, within HP15_1914 at 2029.121 kb on + strand, within HP15_1914 at 2029.129 kb on - strand, within HP15_1914 at 2029.233 kb on - strand, within HP15_1914 at 2029.444 kb on + strand, within HP15_1914 at 2029.661 kb on - strand at 2029.688 kb on - strand at 2029.728 kb on + strand at 2029.747 kb on + strand at 2029.964 kb on - strand, within HP15_1915 at 2030.029 kb on - strand, within HP15_1915 at 2030.228 kb on - strand, within HP15_1915 at 2030.271 kb on + strand, within HP15_1915 at 2030.285 kb on + strand, within HP15_1915 at 2030.300 kb on - strand, within HP15_1915 at 2030.530 kb on - strand, within HP15_1915 at 2030.531 kb on + strand, within HP15_1915 at 2030.562 kb on + strand, within HP15_1915 at 2030.587 kb on + strand, within HP15_1915 at 2030.612 kb on + strand, within HP15_1915 at 2030.698 kb on - strand at 2030.714 kb on + strand, within HP15_1915 at 2030.812 kb on - strand, within HP15_1915
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 2,026,916 - HP15_1913 0.11 +1.2 2,027,022 - HP15_1913 0.20 +0.9 2,027,048 + HP15_1913 0.22 +0.1 2,027,124 - HP15_1913 0.29 +1.6 2,027,133 - HP15_1913 0.30 +0.2 2,027,148 + HP15_1913 0.31 +0.2 2,027,296 - HP15_1913 0.44 -0.7 2,027,350 + HP15_1913 0.49 +1.4 2,027,355 + HP15_1913 0.50 -0.2 2,027,358 - HP15_1913 0.50 +1.4 2,027,399 - HP15_1913 0.54 +1.6 2,027,491 + HP15_1913 0.62 -0.2 2,027,501 - HP15_1913 0.63 -0.3 2,027,506 - HP15_1913 0.63 -0.7 2,027,542 - +0.7 2,027,617 + HP15_1913 0.73 +0.5 2,027,625 - HP15_1913 0.74 +0.9 2,027,652 - HP15_1913 0.76 +0.6 2,027,726 - HP15_1913 0.83 -0.2 2,027,856 + +0.5 2,027,976 - +0.0 2,028,005 + +0.3 2,028,027 + -0.1 2,028,225 - HP15_1914 0.16 -0.3 2,028,322 + HP15_1914 0.21 +0.1 2,028,587 + HP15_1914 0.35 +0.4 2,028,803 + HP15_1914 0.47 +0.2 2,028,968 - HP15_1914 0.55 +0.2 2,028,987 + HP15_1914 0.56 -0.4 2,029,109 + HP15_1914 0.63 +0.1 2,029,121 + HP15_1914 0.63 -0.5 2,029,121 + HP15_1914 0.63 -0.9 2,029,129 - HP15_1914 0.64 +0.4 2,029,233 - HP15_1914 0.69 +1.2 2,029,444 + HP15_1914 0.80 -1.2 2,029,661 - +0.5 2,029,688 - +0.8 2,029,728 + +0.1 2,029,747 + -0.9 2,029,964 - HP15_1915 0.13 -0.1 2,030,029 - HP15_1915 0.18 +0.2 2,030,228 - HP15_1915 0.36 +1.7 2,030,271 + HP15_1915 0.39 +1.3 2,030,285 + HP15_1915 0.41 -0.0 2,030,300 - HP15_1915 0.42 -0.1 2,030,530 - HP15_1915 0.62 +0.2 2,030,531 + HP15_1915 0.62 -0.5 2,030,562 + HP15_1915 0.65 -0.4 2,030,587 + HP15_1915 0.67 +1.1 2,030,612 + HP15_1915 0.69 -1.5 2,030,698 - -0.5 2,030,714 + HP15_1915 0.78 +1.3 2,030,812 - HP15_1915 0.86 -0.7
Or see this region's nucleotide sequence