Strain Fitness in Marinobacter adhaerens HP15 around HP15_1868

Experiment: L-Proline as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1866 and HP15_1867 are separated by 88 nucleotidesHP15_1867 and HP15_1868 are separated by 44 nucleotidesHP15_1868 and HP15_1869 are separated by 62 nucleotidesHP15_1869 and HP15_1870 are separated by 57 nucleotides HP15_1866: HP15_1866 - conserved hypothetical protein, at 1,972,409 to 1,973,308 _1866 HP15_1867: HP15_1867 - biopolymer transport protein, at 1,973,397 to 1,973,837 _1867 HP15_1868: HP15_1868 - biopolymer transport protein ExbD/TolR, at 1,973,882 to 1,974,346 _1868 HP15_1869: HP15_1869 - biopolymer transport protein, at 1,974,409 to 1,974,990 _1869 HP15_1870: HP15_1870 - conserved hypothetical protein, secreted, at 1,975,048 to 1,975,395 _1870 Position (kb) 1973 1974 1975Strain fitness (log2 ratio) -1 0 1at 1972.926 kb on + strand, within HP15_1866at 1973.112 kb on - strand, within HP15_1866at 1973.215 kb on + strand, within HP15_1866at 1973.289 kb on + strandat 1973.347 kb on + strandat 1973.347 kb on + strandat 1973.347 kb on + strandat 1973.427 kb on + strandat 1973.460 kb on + strand, within HP15_1867at 1973.468 kb on - strand, within HP15_1867at 1973.468 kb on - strand, within HP15_1867at 1973.614 kb on + strand, within HP15_1867at 1973.632 kb on + strand, within HP15_1867at 1973.806 kb on - strandat 1973.821 kb on + strandat 1973.822 kb on - strandat 1973.886 kb on - strandat 1973.886 kb on - strandat 1973.937 kb on + strand, within HP15_1868at 1973.976 kb on - strand, within HP15_1868at 1974.037 kb on + strand, within HP15_1868at 1974.045 kb on - strand, within HP15_1868at 1974.117 kb on + strand, within HP15_1868at 1974.130 kb on - strand, within HP15_1868at 1974.349 kb on + strandat 1974.385 kb on + strandat 1974.425 kb on + strandat 1974.486 kb on + strand, within HP15_1869at 1974.492 kb on - strand, within HP15_1869at 1974.492 kb on - strand, within HP15_1869at 1974.676 kb on - strand, within HP15_1869at 1974.681 kb on - strand, within HP15_1869at 1974.772 kb on + strand, within HP15_1869at 1974.820 kb on + strand, within HP15_1869at 1974.988 kb on + strandat 1975.021 kb on + strandat 1975.039 kb on + strandat 1975.203 kb on + strand, within HP15_1870at 1975.203 kb on + strand, within HP15_1870at 1975.211 kb on - strand, within HP15_1870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
remove
1,972,926 + HP15_1866 0.57 -0.2
1,973,112 - HP15_1866 0.78 +0.7
1,973,215 + HP15_1866 0.90 +0.2
1,973,289 + -0.5
1,973,347 + +0.2
1,973,347 + +0.1
1,973,347 + -0.2
1,973,427 + +0.0
1,973,460 + HP15_1867 0.14 +1.3
1,973,468 - HP15_1867 0.16 +0.2
1,973,468 - HP15_1867 0.16 +0.4
1,973,614 + HP15_1867 0.49 -0.4
1,973,632 + HP15_1867 0.53 -0.3
1,973,806 - -0.6
1,973,821 + +0.8
1,973,822 - +1.2
1,973,886 - +1.1
1,973,886 - +1.0
1,973,937 + HP15_1868 0.12 +0.2
1,973,976 - HP15_1868 0.20 -0.3
1,974,037 + HP15_1868 0.33 -0.2
1,974,045 - HP15_1868 0.35 +1.1
1,974,117 + HP15_1868 0.51 +1.1
1,974,130 - HP15_1868 0.53 -0.4
1,974,349 + -0.4
1,974,385 + +0.3
1,974,425 + -0.5
1,974,486 + HP15_1869 0.13 +1.2
1,974,492 - HP15_1869 0.14 -0.2
1,974,492 - HP15_1869 0.14 +1.2
1,974,676 - HP15_1869 0.46 -0.1
1,974,681 - HP15_1869 0.47 +1.6
1,974,772 + HP15_1869 0.62 -0.4
1,974,820 + HP15_1869 0.71 -1.0
1,974,988 + -0.3
1,975,021 + +0.4
1,975,039 + -0.1
1,975,203 + HP15_1870 0.45 -1.2
1,975,203 + HP15_1870 0.45 -0.9
1,975,211 - HP15_1870 0.47 +1.3

Or see this region's nucleotide sequence