Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3482 and Dsui_3483 are separated by 20 nucleotides Dsui_3483 and Dsui_3484 are separated by 112 nucleotides Dsui_3484 and Dsui_3485 are separated by 74 nucleotides
Dsui_3482: Dsui_3482 - Na+/H+ dicarboxylate symporter, at 3,746,322 to 3,747,635
_3482
Dsui_3483: Dsui_3483 - putative membrane protein required for alginate biosynthesis, at 3,747,656 to 3,748,001
_3483
Dsui_3484: Dsui_3484 - putative permease, at 3,748,114 to 3,748,881
_3484
Dsui_3485: Dsui_3485 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,748,956 to 3,750,836
_3485
Position (kb)
3748
3749 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3747.245 kb on - strand, within Dsui_3482 at 3747.252 kb on + strand, within Dsui_3482 at 3747.259 kb on + strand, within Dsui_3482 at 3747.262 kb on - strand, within Dsui_3482 at 3747.612 kb on - strand at 3747.637 kb on - strand at 3747.667 kb on + strand at 3747.768 kb on + strand, within Dsui_3483 at 3747.816 kb on - strand, within Dsui_3483 at 3747.816 kb on - strand, within Dsui_3483 at 3747.872 kb on + strand, within Dsui_3483 at 3747.880 kb on - strand, within Dsui_3483 at 3747.886 kb on + strand, within Dsui_3483 at 3747.894 kb on - strand, within Dsui_3483 at 3747.899 kb on - strand, within Dsui_3483 at 3747.904 kb on + strand, within Dsui_3483 at 3747.912 kb on - strand, within Dsui_3483 at 3748.062 kb on - strand at 3748.238 kb on + strand, within Dsui_3484 at 3748.667 kb on + strand, within Dsui_3484 at 3748.713 kb on + strand, within Dsui_3484 at 3748.713 kb on + strand, within Dsui_3484 at 3748.989 kb on + strand at 3749.054 kb on + strand at 3749.158 kb on + strand, within Dsui_3485 at 3749.166 kb on - strand at 3749.166 kb on - strand at 3749.187 kb on - strand at 3749.222 kb on - strand, within Dsui_3485 at 3749.228 kb on + strand, within Dsui_3485 at 3749.388 kb on + strand, within Dsui_3485 at 3749.470 kb on - strand, within Dsui_3485 at 3749.495 kb on + strand, within Dsui_3485 at 3749.551 kb on - strand at 3749.640 kb on - strand, within Dsui_3485 at 3749.698 kb on + strand, within Dsui_3485 at 3749.744 kb on + strand, within Dsui_3485 at 3749.752 kb on - strand at 3749.833 kb on - strand, within Dsui_3485
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 3,747,245 - Dsui_3482 0.70 +0.5 3,747,252 + Dsui_3482 0.71 -0.0 3,747,259 + Dsui_3482 0.71 -0.4 3,747,262 - Dsui_3482 0.72 -0.1 3,747,612 - -0.2 3,747,637 - +0.1 3,747,667 + -0.2 3,747,768 + Dsui_3483 0.32 +1.2 3,747,816 - Dsui_3483 0.46 +0.3 3,747,816 - Dsui_3483 0.46 +1.2 3,747,872 + Dsui_3483 0.62 -1.2 3,747,880 - Dsui_3483 0.65 -0.8 3,747,886 + Dsui_3483 0.66 -0.1 3,747,894 - Dsui_3483 0.69 -0.0 3,747,899 - Dsui_3483 0.70 -0.4 3,747,904 + Dsui_3483 0.72 -0.5 3,747,912 - Dsui_3483 0.74 -0.7 3,748,062 - -0.8 3,748,238 + Dsui_3484 0.16 -0.0 3,748,667 + Dsui_3484 0.72 -0.8 3,748,713 + Dsui_3484 0.78 +0.4 3,748,713 + Dsui_3484 0.78 -1.0 3,748,989 + -0.0 3,749,054 + +0.2 3,749,158 + Dsui_3485 0.11 +0.6 3,749,166 - +0.6 3,749,166 - +1.0 3,749,187 - +2.0 3,749,222 - Dsui_3485 0.14 -1.8 3,749,228 + Dsui_3485 0.14 +0.3 3,749,388 + Dsui_3485 0.23 -0.9 3,749,470 - Dsui_3485 0.27 +0.6 3,749,495 + Dsui_3485 0.29 -0.0 3,749,551 - +0.4 3,749,640 - Dsui_3485 0.36 -0.2 3,749,698 + Dsui_3485 0.39 -0.3 3,749,744 + Dsui_3485 0.42 -0.7 3,749,752 - +2.0 3,749,833 - Dsui_3485 0.47 -0.2
Or see this region's nucleotide sequence