Strain Fitness in Dechlorosoma suillum PS around Dsui_3484

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3482 and Dsui_3483 are separated by 20 nucleotidesDsui_3483 and Dsui_3484 are separated by 112 nucleotidesDsui_3484 and Dsui_3485 are separated by 74 nucleotides Dsui_3482: Dsui_3482 - Na+/H+ dicarboxylate symporter, at 3,746,322 to 3,747,635 _3482 Dsui_3483: Dsui_3483 - putative membrane protein required for alginate biosynthesis, at 3,747,656 to 3,748,001 _3483 Dsui_3484: Dsui_3484 - putative permease, at 3,748,114 to 3,748,881 _3484 Dsui_3485: Dsui_3485 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,748,956 to 3,750,836 _3485 Position (kb) 3748 3749Strain fitness (log2 ratio) -2 -1 0 1 2at 3747.245 kb on - strand, within Dsui_3482at 3747.252 kb on + strand, within Dsui_3482at 3747.259 kb on + strand, within Dsui_3482at 3747.262 kb on - strand, within Dsui_3482at 3747.612 kb on - strandat 3747.637 kb on - strandat 3747.667 kb on + strandat 3747.768 kb on + strand, within Dsui_3483at 3747.816 kb on - strand, within Dsui_3483at 3747.816 kb on - strand, within Dsui_3483at 3747.872 kb on + strand, within Dsui_3483at 3747.880 kb on - strand, within Dsui_3483at 3747.886 kb on + strand, within Dsui_3483at 3747.894 kb on - strand, within Dsui_3483at 3747.899 kb on - strand, within Dsui_3483at 3747.904 kb on + strand, within Dsui_3483at 3747.912 kb on - strand, within Dsui_3483at 3748.062 kb on - strandat 3748.238 kb on + strand, within Dsui_3484at 3748.667 kb on + strand, within Dsui_3484at 3748.713 kb on + strand, within Dsui_3484at 3748.713 kb on + strand, within Dsui_3484at 3748.989 kb on + strandat 3749.054 kb on + strandat 3749.158 kb on + strand, within Dsui_3485at 3749.166 kb on - strandat 3749.166 kb on - strandat 3749.187 kb on - strandat 3749.222 kb on - strand, within Dsui_3485at 3749.228 kb on + strand, within Dsui_3485at 3749.388 kb on + strand, within Dsui_3485at 3749.470 kb on - strand, within Dsui_3485at 3749.495 kb on + strand, within Dsui_3485at 3749.551 kb on - strandat 3749.640 kb on - strand, within Dsui_3485at 3749.698 kb on + strand, within Dsui_3485at 3749.744 kb on + strand, within Dsui_3485at 3749.752 kb on - strandat 3749.833 kb on - strand, within Dsui_3485

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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3,747,245 - Dsui_3482 0.70 +0.5
3,747,252 + Dsui_3482 0.71 -0.0
3,747,259 + Dsui_3482 0.71 -0.4
3,747,262 - Dsui_3482 0.72 -0.1
3,747,612 - -0.2
3,747,637 - +0.1
3,747,667 + -0.2
3,747,768 + Dsui_3483 0.32 +1.2
3,747,816 - Dsui_3483 0.46 +0.3
3,747,816 - Dsui_3483 0.46 +1.2
3,747,872 + Dsui_3483 0.62 -1.2
3,747,880 - Dsui_3483 0.65 -0.8
3,747,886 + Dsui_3483 0.66 -0.1
3,747,894 - Dsui_3483 0.69 -0.0
3,747,899 - Dsui_3483 0.70 -0.4
3,747,904 + Dsui_3483 0.72 -0.5
3,747,912 - Dsui_3483 0.74 -0.7
3,748,062 - -0.8
3,748,238 + Dsui_3484 0.16 -0.0
3,748,667 + Dsui_3484 0.72 -0.8
3,748,713 + Dsui_3484 0.78 +0.4
3,748,713 + Dsui_3484 0.78 -1.0
3,748,989 + -0.0
3,749,054 + +0.2
3,749,158 + Dsui_3485 0.11 +0.6
3,749,166 - +0.6
3,749,166 - +1.0
3,749,187 - +2.0
3,749,222 - Dsui_3485 0.14 -1.8
3,749,228 + Dsui_3485 0.14 +0.3
3,749,388 + Dsui_3485 0.23 -0.9
3,749,470 - Dsui_3485 0.27 +0.6
3,749,495 + Dsui_3485 0.29 -0.0
3,749,551 - +0.4
3,749,640 - Dsui_3485 0.36 -0.2
3,749,698 + Dsui_3485 0.39 -0.3
3,749,744 + Dsui_3485 0.42 -0.7
3,749,752 - +2.0
3,749,833 - Dsui_3485 0.47 -0.2

Or see this region's nucleotide sequence