Strain Fitness in Dechlorosoma suillum PS around Dsui_3423

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3422 and Dsui_3423 are separated by 287 nucleotidesDsui_3423 and Dsui_3424 are separated by 85 nucleotidesDsui_3424 and Dsui_3425 are separated by 82 nucleotides Dsui_3422: Dsui_3422 - hemerythrin-like metal-binding domain-containing protein, at 3,674,130 to 3,674,606 _3422 Dsui_3423: Dsui_3423 - hydroxypyruvate isomerase, at 3,674,894 to 3,675,688 _3423 Dsui_3424: Dsui_3424 - ATP:cob(I)alamin adenosyltransferase, at 3,675,774 to 3,676,352 _3424 Dsui_3425: Dsui_3425 - putative translation initiation inhibitor, yjgF family, at 3,676,435 to 3,676,833 _3425 Position (kb) 3674 3675 3676Strain fitness (log2 ratio) -2 -1 0 1 2at 3673.926 kb on - strandat 3673.990 kb on - strandat 3674.025 kb on + strandat 3674.056 kb on + strandat 3674.108 kb on + strandat 3674.127 kb on + strandat 3674.127 kb on + strandat 3674.142 kb on + strandat 3674.215 kb on + strand, within Dsui_3422at 3674.216 kb on + strand, within Dsui_3422at 3674.228 kb on + strand, within Dsui_3422at 3674.247 kb on + strand, within Dsui_3422at 3674.282 kb on + strand, within Dsui_3422at 3674.301 kb on - strand, within Dsui_3422at 3674.334 kb on - strand, within Dsui_3422at 3674.405 kb on - strand, within Dsui_3422at 3674.421 kb on + strand, within Dsui_3422at 3674.443 kb on + strand, within Dsui_3422at 3674.451 kb on - strandat 3674.461 kb on + strand, within Dsui_3422at 3674.471 kb on - strand, within Dsui_3422at 3674.637 kb on - strandat 3674.714 kb on + strandat 3674.863 kb on + strandat 3674.889 kb on - strandat 3674.929 kb on - strandat 3674.929 kb on - strandat 3675.112 kb on + strandat 3675.196 kb on - strand, within Dsui_3423at 3675.480 kb on - strand, within Dsui_3423at 3675.563 kb on - strand, within Dsui_3423at 3675.579 kb on - strand, within Dsui_3423at 3675.670 kb on - strandat 3675.723 kb on + strandat 3675.742 kb on + strandat 3675.760 kb on - strandat 3675.765 kb on - strandat 3675.818 kb on + strandat 3675.852 kb on + strand, within Dsui_3424at 3675.912 kb on + strand, within Dsui_3424at 3676.039 kb on + strand, within Dsui_3424at 3676.042 kb on - strandat 3676.259 kb on + strand, within Dsui_3424at 3676.313 kb on + strandat 3676.489 kb on - strandat 3676.497 kb on + strand, within Dsui_3425at 3676.538 kb on - strand, within Dsui_3425at 3676.561 kb on + strandat 3676.621 kb on + strand, within Dsui_3425at 3676.646 kb on + strandat 3676.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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3,673,926 - +0.3
3,673,990 - -0.8
3,674,025 + +0.5
3,674,056 + -0.9
3,674,108 + -0.6
3,674,127 + -1.3
3,674,127 + +0.7
3,674,142 + -0.0
3,674,215 + Dsui_3422 0.18 +1.3
3,674,216 + Dsui_3422 0.18 +0.4
3,674,228 + Dsui_3422 0.21 +0.2
3,674,247 + Dsui_3422 0.25 -0.4
3,674,282 + Dsui_3422 0.32 +0.4
3,674,301 - Dsui_3422 0.36 -0.1
3,674,334 - Dsui_3422 0.43 +0.3
3,674,405 - Dsui_3422 0.58 -1.2
3,674,421 + Dsui_3422 0.61 -0.3
3,674,443 + Dsui_3422 0.66 +0.2
3,674,451 - +2.0
3,674,461 + Dsui_3422 0.69 +0.7
3,674,471 - Dsui_3422 0.71 +1.0
3,674,637 - +0.3
3,674,714 + +0.4
3,674,863 + +1.0
3,674,889 - +0.2
3,674,929 - -1.3
3,674,929 - +0.3
3,675,112 + +2.0
3,675,196 - Dsui_3423 0.38 -0.8
3,675,480 - Dsui_3423 0.74 -0.2
3,675,563 - Dsui_3423 0.84 +0.2
3,675,579 - Dsui_3423 0.86 -1.8
3,675,670 - -0.0
3,675,723 + +1.0
3,675,742 + -0.1
3,675,760 - -1.0
3,675,765 - +1.0
3,675,818 + -1.8
3,675,852 + Dsui_3424 0.13 -0.4
3,675,912 + Dsui_3424 0.24 -0.5
3,676,039 + Dsui_3424 0.46 -0.9
3,676,042 - +1.0
3,676,259 + Dsui_3424 0.84 +0.8
3,676,313 + +0.4
3,676,489 - +0.4
3,676,497 + Dsui_3425 0.16 -1.4
3,676,538 - Dsui_3425 0.26 +0.6
3,676,561 + +0.4
3,676,621 + Dsui_3425 0.47 +0.6
3,676,646 + -0.8
3,676,654 - +1.0

Or see this region's nucleotide sequence