Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3422 and Dsui_3423 are separated by 287 nucleotides Dsui_3423 and Dsui_3424 are separated by 85 nucleotides Dsui_3424 and Dsui_3425 are separated by 82 nucleotides
Dsui_3422: Dsui_3422 - hemerythrin-like metal-binding domain-containing protein, at 3,674,130 to 3,674,606
_3422
Dsui_3423: Dsui_3423 - hydroxypyruvate isomerase, at 3,674,894 to 3,675,688
_3423
Dsui_3424: Dsui_3424 - ATP:cob(I)alamin adenosyltransferase, at 3,675,774 to 3,676,352
_3424
Dsui_3425: Dsui_3425 - putative translation initiation inhibitor, yjgF family, at 3,676,435 to 3,676,833
_3425
Position (kb)
3674
3675
3676 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3673.926 kb on - strand at 3673.990 kb on - strand at 3674.025 kb on + strand at 3674.056 kb on + strand at 3674.108 kb on + strand at 3674.127 kb on + strand at 3674.127 kb on + strand at 3674.142 kb on + strand at 3674.215 kb on + strand, within Dsui_3422 at 3674.216 kb on + strand, within Dsui_3422 at 3674.228 kb on + strand, within Dsui_3422 at 3674.247 kb on + strand, within Dsui_3422 at 3674.282 kb on + strand, within Dsui_3422 at 3674.301 kb on - strand, within Dsui_3422 at 3674.334 kb on - strand, within Dsui_3422 at 3674.405 kb on - strand, within Dsui_3422 at 3674.421 kb on + strand, within Dsui_3422 at 3674.443 kb on + strand, within Dsui_3422 at 3674.451 kb on - strand at 3674.461 kb on + strand, within Dsui_3422 at 3674.471 kb on - strand, within Dsui_3422 at 3674.637 kb on - strand at 3674.714 kb on + strand at 3674.863 kb on + strand at 3674.889 kb on - strand at 3674.929 kb on - strand at 3674.929 kb on - strand at 3675.112 kb on + strand at 3675.196 kb on - strand, within Dsui_3423 at 3675.480 kb on - strand, within Dsui_3423 at 3675.563 kb on - strand, within Dsui_3423 at 3675.579 kb on - strand, within Dsui_3423 at 3675.670 kb on - strand at 3675.723 kb on + strand at 3675.742 kb on + strand at 3675.760 kb on - strand at 3675.765 kb on - strand at 3675.818 kb on + strand at 3675.852 kb on + strand, within Dsui_3424 at 3675.912 kb on + strand, within Dsui_3424 at 3676.039 kb on + strand, within Dsui_3424 at 3676.042 kb on - strand at 3676.259 kb on + strand, within Dsui_3424 at 3676.313 kb on + strand at 3676.489 kb on - strand at 3676.497 kb on + strand, within Dsui_3425 at 3676.538 kb on - strand, within Dsui_3425 at 3676.561 kb on + strand at 3676.621 kb on + strand, within Dsui_3425 at 3676.646 kb on + strand at 3676.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 3,673,926 - +0.3 3,673,990 - -0.8 3,674,025 + +0.5 3,674,056 + -0.9 3,674,108 + -0.6 3,674,127 + -1.3 3,674,127 + +0.7 3,674,142 + -0.0 3,674,215 + Dsui_3422 0.18 +1.3 3,674,216 + Dsui_3422 0.18 +0.4 3,674,228 + Dsui_3422 0.21 +0.2 3,674,247 + Dsui_3422 0.25 -0.4 3,674,282 + Dsui_3422 0.32 +0.4 3,674,301 - Dsui_3422 0.36 -0.1 3,674,334 - Dsui_3422 0.43 +0.3 3,674,405 - Dsui_3422 0.58 -1.2 3,674,421 + Dsui_3422 0.61 -0.3 3,674,443 + Dsui_3422 0.66 +0.2 3,674,451 - +2.0 3,674,461 + Dsui_3422 0.69 +0.7 3,674,471 - Dsui_3422 0.71 +1.0 3,674,637 - +0.3 3,674,714 + +0.4 3,674,863 + +1.0 3,674,889 - +0.2 3,674,929 - -1.3 3,674,929 - +0.3 3,675,112 + +2.0 3,675,196 - Dsui_3423 0.38 -0.8 3,675,480 - Dsui_3423 0.74 -0.2 3,675,563 - Dsui_3423 0.84 +0.2 3,675,579 - Dsui_3423 0.86 -1.8 3,675,670 - -0.0 3,675,723 + +1.0 3,675,742 + -0.1 3,675,760 - -1.0 3,675,765 - +1.0 3,675,818 + -1.8 3,675,852 + Dsui_3424 0.13 -0.4 3,675,912 + Dsui_3424 0.24 -0.5 3,676,039 + Dsui_3424 0.46 -0.9 3,676,042 - +1.0 3,676,259 + Dsui_3424 0.84 +0.8 3,676,313 + +0.4 3,676,489 - +0.4 3,676,497 + Dsui_3425 0.16 -1.4 3,676,538 - Dsui_3425 0.26 +0.6 3,676,561 + +0.4 3,676,621 + Dsui_3425 0.47 +0.6 3,676,646 + -0.8 3,676,654 - +1.0
Or see this region's nucleotide sequence