Strain Fitness in Dechlorosoma suillum PS around Dsui_2644

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2642 and Dsui_2643 are separated by 14 nucleotidesDsui_2643 and Dsui_2644 are separated by 179 nucleotidesDsui_2644 and Dsui_2645 overlap by 4 nucleotides Dsui_2642: Dsui_2642 - outer membrane protein, at 2,794,183 to 2,795,605 _2642 Dsui_2643: Dsui_2643 - hypothetical protein, at 2,795,620 to 2,795,895 _2643 Dsui_2644: Dsui_2644 - heavy metal response regulator, at 2,796,075 to 2,796,752 _2644 Dsui_2645: Dsui_2645 - heavy metal sensor kinase, at 2,796,749 to 2,798,149 _2645 Position (kb) 2796 2797Strain fitness (log2 ratio) -1 0 1 2at 2795.257 kb on - strand, within Dsui_2642at 2795.393 kb on - strand, within Dsui_2642at 2795.412 kb on - strandat 2795.618 kb on + strandat 2795.626 kb on - strandat 2795.640 kb on + strandat 2795.640 kb on + strandat 2795.797 kb on + strandat 2795.939 kb on - strandat 2795.968 kb on + strandat 2795.977 kb on + strandat 2796.126 kb on - strandat 2796.213 kb on - strand, within Dsui_2644at 2796.234 kb on - strandat 2796.302 kb on + strand, within Dsui_2644at 2796.302 kb on + strand, within Dsui_2644at 2796.379 kb on - strandat 2796.407 kb on + strand, within Dsui_2644at 2796.601 kb on + strand, within Dsui_2644at 2796.616 kb on - strand, within Dsui_2644at 2796.725 kb on + strandat 2796.728 kb on - strandat 2796.732 kb on + strandat 2796.831 kb on - strandat 2797.037 kb on + strand, within Dsui_2645at 2797.171 kb on + strand, within Dsui_2645at 2797.231 kb on + strand, within Dsui_2645at 2797.231 kb on + strand, within Dsui_2645at 2797.458 kb on - strand, within Dsui_2645at 2797.575 kb on + strand, within Dsui_2645at 2797.701 kb on + strand, within Dsui_2645

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,795,257 - Dsui_2642 0.75 -0.1
2,795,393 - Dsui_2642 0.85 -0.7
2,795,412 - -0.1
2,795,618 + -0.5
2,795,626 - +0.9
2,795,640 + +1.4
2,795,640 + +2.2
2,795,797 + -0.4
2,795,939 - +0.6
2,795,968 + +0.7
2,795,977 + +0.5
2,796,126 - -1.5
2,796,213 - Dsui_2644 0.20 -1.4
2,796,234 - -0.8
2,796,302 + Dsui_2644 0.33 -1.1
2,796,302 + Dsui_2644 0.33 +0.3
2,796,379 - +0.6
2,796,407 + Dsui_2644 0.49 -1.0
2,796,601 + Dsui_2644 0.78 -0.1
2,796,616 - Dsui_2644 0.80 +0.1
2,796,725 + +0.6
2,796,728 - -0.4
2,796,732 + -0.1
2,796,831 - -0.6
2,797,037 + Dsui_2645 0.21 -0.3
2,797,171 + Dsui_2645 0.30 -0.3
2,797,231 + Dsui_2645 0.34 -0.9
2,797,231 + Dsui_2645 0.34 +0.7
2,797,458 - Dsui_2645 0.51 +0.4
2,797,575 + Dsui_2645 0.59 -0.1
2,797,701 + Dsui_2645 0.68 -0.1

Or see this region's nucleotide sequence