Strain Fitness in Dechlorosoma suillum PS around Dsui_2606

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2605 and Dsui_2606 are separated by 28 nucleotidesDsui_2606 and Dsui_2607 overlap by 4 nucleotidesDsui_2607 and Dsui_2608 are separated by 22 nucleotides Dsui_2605: Dsui_2605 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,759,672 to 2,761,408 _2605 Dsui_2606: Dsui_2606 - soluble lytic murein transglycosylase-like protein, at 2,761,437 to 2,761,913 _2606 Dsui_2607: Dsui_2607 - hypothetical protein, at 2,761,910 to 2,762,131 _2607 Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610 _2608 Position (kb) 2761 2762Strain fitness (log2 ratio) -2 -1 0 1at 2760.516 kb on + strand, within Dsui_2605at 2760.550 kb on - strand, within Dsui_2605at 2760.698 kb on + strand, within Dsui_2605at 2760.712 kb on + strand, within Dsui_2605at 2760.877 kb on + strand, within Dsui_2605at 2760.890 kb on - strand, within Dsui_2605at 2760.902 kb on + strand, within Dsui_2605at 2761.005 kb on - strand, within Dsui_2605at 2761.063 kb on + strand, within Dsui_2605at 2761.094 kb on + strand, within Dsui_2605at 2761.170 kb on - strand, within Dsui_2605at 2761.249 kb on - strandat 2761.259 kb on - strandat 2761.513 kb on + strand, within Dsui_2606at 2761.595 kb on - strand, within Dsui_2606at 2761.634 kb on + strand, within Dsui_2606at 2761.642 kb on - strand, within Dsui_2606at 2761.891 kb on + strandat 2761.891 kb on + strandat 2762.067 kb on + strand, within Dsui_2607at 2762.082 kb on + strand, within Dsui_2607at 2762.140 kb on + strandat 2762.149 kb on - strandat 2762.163 kb on + strandat 2762.232 kb on + strandat 2762.298 kb on - strandat 2762.298 kb on - strandat 2762.379 kb on + strandat 2762.464 kb on + strand, within Dsui_2608at 2762.561 kb on - strand, within Dsui_2608at 2762.598 kb on + strand, within Dsui_2608at 2762.606 kb on - strand, within Dsui_2608at 2762.740 kb on + strand, within Dsui_2608at 2762.740 kb on + strand, within Dsui_2608at 2762.754 kb on - strand, within Dsui_2608at 2762.766 kb on - strand, within Dsui_2608at 2762.883 kb on + strand, within Dsui_2608

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,760,516 + Dsui_2605 0.49 -0.4
2,760,550 - Dsui_2605 0.51 -0.4
2,760,698 + Dsui_2605 0.59 -0.6
2,760,712 + Dsui_2605 0.60 +0.5
2,760,877 + Dsui_2605 0.69 -1.0
2,760,890 - Dsui_2605 0.70 -1.0
2,760,902 + Dsui_2605 0.71 -0.7
2,761,005 - Dsui_2605 0.77 -0.4
2,761,063 + Dsui_2605 0.80 +0.2
2,761,094 + Dsui_2605 0.82 +0.5
2,761,170 - Dsui_2605 0.86 -0.2
2,761,249 - -1.1
2,761,259 - +0.0
2,761,513 + Dsui_2606 0.16 -1.2
2,761,595 - Dsui_2606 0.33 +0.3
2,761,634 + Dsui_2606 0.41 -2.0
2,761,642 - Dsui_2606 0.43 -2.0
2,761,891 + +0.5
2,761,891 + -0.2
2,762,067 + Dsui_2607 0.71 -0.0
2,762,082 + Dsui_2607 0.77 -1.3
2,762,140 + -0.5
2,762,149 - -0.1
2,762,163 + -0.0
2,762,232 + -0.2
2,762,298 - -0.4
2,762,298 - +0.0
2,762,379 + -0.2
2,762,464 + Dsui_2608 0.13 -1.0
2,762,561 - Dsui_2608 0.17 -0.1
2,762,598 + Dsui_2608 0.18 -0.7
2,762,606 - Dsui_2608 0.18 +0.7
2,762,740 + Dsui_2608 0.24 -0.9
2,762,740 + Dsui_2608 0.24 +0.1
2,762,754 - Dsui_2608 0.24 -0.7
2,762,766 - Dsui_2608 0.25 +1.6
2,762,883 + Dsui_2608 0.30 +0.9

Or see this region's nucleotide sequence