Strain Fitness in Dechlorosoma suillum PS around Dsui_2533

Experiment: defined media with 30 mM sodium lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2532 and Dsui_2533 are separated by 70 nucleotidesDsui_2533 and Dsui_2534 overlap by 4 nucleotides Dsui_2532: Dsui_2532 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,684,058 to 2,685,083 _2532 Dsui_2533: Dsui_2533 - TRAP-type C4-dicarboxylate transport system, small permease component, at 2,685,154 to 2,685,639 _2533 Dsui_2534: Dsui_2534 - TRAP transporter, DctM subunit, at 2,685,636 to 2,686,925 _2534 Position (kb) 2685 2686Strain fitness (log2 ratio) -1 0 1 2at 2684.230 kb on - strandat 2684.273 kb on + strand, within Dsui_2532at 2684.298 kb on - strandat 2684.404 kb on - strand, within Dsui_2532at 2684.487 kb on + strand, within Dsui_2532at 2684.556 kb on + strand, within Dsui_2532at 2684.566 kb on - strand, within Dsui_2532at 2684.680 kb on - strand, within Dsui_2532at 2684.732 kb on + strand, within Dsui_2532at 2684.746 kb on - strandat 2684.756 kb on - strandat 2684.765 kb on - strand, within Dsui_2532at 2684.806 kb on - strandat 2684.868 kb on + strand, within Dsui_2532at 2685.006 kb on + strandat 2685.047 kb on - strandat 2685.226 kb on + strand, within Dsui_2533at 2685.234 kb on - strand, within Dsui_2533at 2685.325 kb on + strand, within Dsui_2533at 2685.438 kb on - strandat 2685.466 kb on + strand, within Dsui_2533at 2685.532 kb on - strand, within Dsui_2533at 2685.585 kb on + strand, within Dsui_2533at 2685.636 kb on - strandat 2685.699 kb on + strandat 2685.744 kb on + strandat 2685.852 kb on + strand, within Dsui_2534at 2685.855 kb on - strand, within Dsui_2534at 2685.921 kb on + strand, within Dsui_2534at 2686.119 kb on + strand, within Dsui_2534at 2686.160 kb on - strandat 2686.205 kb on - strandat 2686.283 kb on - strand, within Dsui_2534at 2686.468 kb on - strand, within Dsui_2534at 2686.496 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
remove
2,684,230 - +2.2
2,684,273 + Dsui_2532 0.21 +0.4
2,684,298 - -0.6
2,684,404 - Dsui_2532 0.34 -0.1
2,684,487 + Dsui_2532 0.42 +1.6
2,684,556 + Dsui_2532 0.49 +0.6
2,684,566 - Dsui_2532 0.50 +0.7
2,684,680 - Dsui_2532 0.61 +0.4
2,684,732 + Dsui_2532 0.66 -1.3
2,684,746 - +0.2
2,684,756 - +2.2
2,684,765 - Dsui_2532 0.69 +0.6
2,684,806 - +0.9
2,684,868 + Dsui_2532 0.79 +0.2
2,685,006 + +0.9
2,685,047 - +1.2
2,685,226 + Dsui_2533 0.15 +0.1
2,685,234 - Dsui_2533 0.16 -0.4
2,685,325 + Dsui_2533 0.35 +0.0
2,685,438 - +2.2
2,685,466 + Dsui_2533 0.64 -1.1
2,685,532 - Dsui_2533 0.78 -1.4
2,685,585 + Dsui_2533 0.89 -0.3
2,685,636 - +0.2
2,685,699 + +0.2
2,685,744 + -0.4
2,685,852 + Dsui_2534 0.17 -0.0
2,685,855 - Dsui_2534 0.17 -1.1
2,685,921 + Dsui_2534 0.22 +0.6
2,686,119 + Dsui_2534 0.37 +0.8
2,686,160 - +0.2
2,686,205 - +2.2
2,686,283 - Dsui_2534 0.50 +0.9
2,686,468 - Dsui_2534 0.64 +1.0
2,686,496 - +2.2

Or see this region's nucleotide sequence