Strain Fitness in Dechlorosoma suillum PS around Dsui_2531

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2530 and Dsui_2531 overlap by 20 nucleotidesDsui_2531 and Dsui_2532 are separated by 93 nucleotides Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234 _2530 Dsui_2531: Dsui_2531 - uncharacterized protein, YfiH family, at 2,683,215 to 2,683,964 _2531 Dsui_2532: Dsui_2532 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,684,058 to 2,685,083 _2532 Position (kb) 2683 2684Strain fitness (log2 ratio) -1 0 1 2 3at 2682.365 kb on + strand, within Dsui_2530at 2682.528 kb on + strand, within Dsui_2530at 2682.536 kb on - strandat 2682.619 kb on + strand, within Dsui_2530at 2682.627 kb on - strand, within Dsui_2530at 2682.628 kb on - strandat 2682.657 kb on - strandat 2682.774 kb on + strand, within Dsui_2530at 2682.984 kb on + strand, within Dsui_2530at 2683.003 kb on - strand, within Dsui_2530at 2683.026 kb on + strand, within Dsui_2530at 2683.028 kb on + strand, within Dsui_2530at 2683.084 kb on + strand, within Dsui_2530at 2683.263 kb on + strandat 2683.266 kb on - strandat 2683.320 kb on + strand, within Dsui_2531at 2683.451 kb on + strand, within Dsui_2531at 2683.573 kb on + strand, within Dsui_2531at 2683.667 kb on + strand, within Dsui_2531at 2683.942 kb on + strandat 2683.958 kb on + strandat 2684.097 kb on - strandat 2684.230 kb on - strandat 2684.273 kb on + strand, within Dsui_2532at 2684.298 kb on - strandat 2684.404 kb on - strand, within Dsui_2532at 2684.487 kb on + strand, within Dsui_2532at 2684.556 kb on + strand, within Dsui_2532at 2684.566 kb on - strand, within Dsui_2532at 2684.680 kb on - strand, within Dsui_2532at 2684.732 kb on + strand, within Dsui_2532at 2684.746 kb on - strandat 2684.756 kb on - strandat 2684.765 kb on - strand, within Dsui_2532at 2684.806 kb on - strandat 2684.868 kb on + strand, within Dsui_2532

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,682,365 + Dsui_2530 0.23 -0.0
2,682,528 + Dsui_2530 0.37 +0.5
2,682,536 - +1.5
2,682,619 + Dsui_2530 0.45 +0.9
2,682,627 - Dsui_2530 0.46 +0.0
2,682,628 - +0.2
2,682,657 - +3.2
2,682,774 + Dsui_2530 0.59 +0.1
2,682,984 + Dsui_2530 0.78 +1.2
2,683,003 - Dsui_2530 0.79 -0.0
2,683,026 + Dsui_2530 0.81 +0.6
2,683,028 + Dsui_2530 0.82 -0.6
2,683,084 + Dsui_2530 0.87 +1.0
2,683,263 + +0.6
2,683,266 - +1.2
2,683,320 + Dsui_2531 0.14 -0.9
2,683,451 + Dsui_2531 0.31 -0.8
2,683,573 + Dsui_2531 0.48 +1.2
2,683,667 + Dsui_2531 0.60 -0.2
2,683,942 + +0.2
2,683,958 + -1.1
2,684,097 - +1.2
2,684,230 - +2.2
2,684,273 + Dsui_2532 0.21 +0.4
2,684,298 - -0.6
2,684,404 - Dsui_2532 0.34 -0.1
2,684,487 + Dsui_2532 0.42 +1.6
2,684,556 + Dsui_2532 0.49 +0.6
2,684,566 - Dsui_2532 0.50 +0.7
2,684,680 - Dsui_2532 0.61 +0.4
2,684,732 + Dsui_2532 0.66 -1.3
2,684,746 - +0.2
2,684,756 - +2.2
2,684,765 - Dsui_2532 0.69 +0.6
2,684,806 - +0.9
2,684,868 + Dsui_2532 0.79 +0.2

Or see this region's nucleotide sequence