Strain Fitness in Dechlorosoma suillum PS around Dsui_2382

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2381 and Dsui_2382 are separated by 137 nucleotidesDsui_2382 and Dsui_2383 are separated by 87 nucleotides Dsui_2381: Dsui_2381 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,528,965 to 2,530,041 _2381 Dsui_2382: Dsui_2382 - PAS domain S-box, at 2,530,179 to 2,532,755 _2382 Dsui_2383: Dsui_2383 - hypothetical protein, at 2,532,843 to 2,534,117 _2383 Position (kb) 2530 2531 2532 2533Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2530.155 kb on + strandat 2530.155 kb on + strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.198 kb on + strandat 2530.289 kb on - strandat 2530.471 kb on - strand, within Dsui_2382at 2530.471 kb on - strand, within Dsui_2382at 2530.613 kb on + strandat 2530.837 kb on - strand, within Dsui_2382at 2530.846 kb on - strand, within Dsui_2382at 2530.934 kb on + strandat 2530.942 kb on - strandat 2531.223 kb on - strand, within Dsui_2382at 2531.335 kb on - strand, within Dsui_2382at 2531.356 kb on - strandat 2531.415 kb on + strandat 2531.484 kb on - strand, within Dsui_2382at 2531.489 kb on - strandat 2531.563 kb on - strand, within Dsui_2382at 2531.579 kb on - strand, within Dsui_2382at 2531.579 kb on - strand, within Dsui_2382at 2531.584 kb on - strandat 2531.779 kb on - strand, within Dsui_2382at 2531.822 kb on + strand, within Dsui_2382at 2532.037 kb on - strand, within Dsui_2382at 2532.083 kb on - strand, within Dsui_2382at 2532.477 kb on - strand, within Dsui_2382at 2532.594 kb on - strandat 2532.744 kb on - strandat 2533.261 kb on - strandat 2533.326 kb on + strand, within Dsui_2383at 2533.331 kb on + strand, within Dsui_2383at 2533.352 kb on + strand, within Dsui_2383at 2533.353 kb on + strand, within Dsui_2383at 2533.372 kb on + strandat 2533.488 kb on + strand, within Dsui_2383at 2533.488 kb on + strandat 2533.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,530,155 + -0.3
2,530,155 + +0.5
2,530,163 - +3.1
2,530,163 - +0.1
2,530,163 - -1.1
2,530,163 - -0.4
2,530,163 - -1.9
2,530,163 - +1.1
2,530,198 + +1.1
2,530,289 - -0.3
2,530,471 - Dsui_2382 0.11 -0.5
2,530,471 - Dsui_2382 0.11 -1.1
2,530,613 + +0.1
2,530,837 - Dsui_2382 0.26 -0.1
2,530,846 - Dsui_2382 0.26 +1.6
2,530,934 + +1.5
2,530,942 - +1.1
2,531,223 - Dsui_2382 0.41 -1.2
2,531,335 - Dsui_2382 0.45 -0.3
2,531,356 - +0.1
2,531,415 + +1.6
2,531,484 - Dsui_2382 0.51 -1.3
2,531,489 - +0.5
2,531,563 - Dsui_2382 0.54 +0.8
2,531,579 - Dsui_2382 0.54 -0.4
2,531,579 - Dsui_2382 0.54 -0.4
2,531,584 - +0.5
2,531,779 - Dsui_2382 0.62 -0.1
2,531,822 + Dsui_2382 0.64 -1.1
2,532,037 - Dsui_2382 0.72 -0.5
2,532,083 - Dsui_2382 0.74 -0.6
2,532,477 - Dsui_2382 0.89 -0.1
2,532,594 - -0.8
2,532,744 - +0.2
2,533,261 - +1.6
2,533,326 + Dsui_2383 0.38 +0.6
2,533,331 + Dsui_2383 0.38 -0.8
2,533,352 + Dsui_2383 0.40 -1.8
2,533,353 + Dsui_2383 0.40 +0.5
2,533,372 + +3.5
2,533,488 + Dsui_2383 0.51 -0.1
2,533,488 + +1.1
2,533,706 - +0.7

Or see this region's nucleotide sequence