Strain Fitness in Dechlorosoma suillum PS around Dsui_2304

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2302 and Dsui_2303 are separated by 39 nucleotidesDsui_2303 and Dsui_2304 are separated by 29 nucleotidesDsui_2304 and Dsui_2305 overlap by 1 nucleotidesDsui_2305 and Dsui_2306 are separated by 200 nucleotides Dsui_2302: Dsui_2302 - acyl-CoA dehydrogenase, at 2,458,532 to 2,460,325 _2302 Dsui_2303: Dsui_2303 - putative membrane protein, at 2,460,365 to 2,461,030 _2303 Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989 _2304 Dsui_2305: Dsui_2305 - electron transfer flavoprotein, beta subunit, at 2,461,989 to 2,462,738 _2305 Dsui_2306: Dsui_2306 - transcriptional regulator, at 2,462,939 to 2,463,523 _2306 Position (kb) 2461 2462Strain fitness (log2 ratio) -2 -1 0 1 2at 2460.127 kb on + strand, within Dsui_2302at 2460.184 kb on + strandat 2460.193 kb on - strandat 2460.193 kb on - strandat 2460.232 kb on - strandat 2460.259 kb on + strandat 2460.267 kb on - strandat 2460.267 kb on - strandat 2460.322 kb on - strandat 2460.342 kb on + strandat 2460.407 kb on - strandat 2460.424 kb on + strandat 2460.636 kb on - strand, within Dsui_2303at 2460.687 kb on + strand, within Dsui_2303at 2460.687 kb on + strand, within Dsui_2303at 2460.776 kb on + strand, within Dsui_2303at 2460.781 kb on + strand, within Dsui_2303at 2460.908 kb on - strand, within Dsui_2303at 2460.992 kb on + strandat 2461.000 kb on - strandat 2461.000 kb on - strandat 2461.005 kb on - strandat 2461.057 kb on + strandat 2461.177 kb on - strand, within Dsui_2304at 2461.384 kb on + strand, within Dsui_2304at 2461.454 kb on - strand, within Dsui_2304at 2461.503 kb on - strand, within Dsui_2304at 2461.561 kb on - strand, within Dsui_2304at 2461.588 kb on + strandat 2462.045 kb on + strandat 2462.061 kb on - strandat 2462.089 kb on - strand, within Dsui_2305at 2462.210 kb on - strand, within Dsui_2305at 2462.272 kb on - strand, within Dsui_2305at 2462.311 kb on - strand, within Dsui_2305at 2462.439 kb on - strand, within Dsui_2305at 2462.458 kb on - strand, within Dsui_2305at 2462.690 kb on + strandat 2462.747 kb on + strandat 2462.747 kb on + strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.788 kb on + strandat 2462.796 kb on - strandat 2462.806 kb on + strandat 2462.814 kb on - strandat 2462.814 kb on - strandat 2462.820 kb on + strandat 2462.828 kb on - strandat 2462.830 kb on + strandat 2462.838 kb on - strandat 2462.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,460,127 + Dsui_2302 0.89 -1.1
2,460,184 + -0.7
2,460,193 - -0.4
2,460,193 - +0.2
2,460,232 - -0.3
2,460,259 + +0.0
2,460,267 - -0.0
2,460,267 - +0.7
2,460,322 - -0.5
2,460,342 + -1.3
2,460,407 - +0.0
2,460,424 + +0.6
2,460,636 - Dsui_2303 0.41 -0.2
2,460,687 + Dsui_2303 0.48 -1.4
2,460,687 + Dsui_2303 0.48 +0.8
2,460,776 + Dsui_2303 0.62 -0.9
2,460,781 + Dsui_2303 0.62 +0.6
2,460,908 - Dsui_2303 0.82 -0.4
2,460,992 + +0.1
2,461,000 - +0.0
2,461,000 - -0.2
2,461,005 - -0.4
2,461,057 + +0.2
2,461,177 - Dsui_2304 0.13 -0.6
2,461,384 + Dsui_2304 0.35 +0.0
2,461,454 - Dsui_2304 0.42 -2.2
2,461,503 - Dsui_2304 0.48 -1.1
2,461,561 - Dsui_2304 0.54 +0.1
2,461,588 + +1.0
2,462,045 + +0.7
2,462,061 - -1.9
2,462,089 - Dsui_2305 0.13 -0.1
2,462,210 - Dsui_2305 0.29 -0.8
2,462,272 - Dsui_2305 0.38 -1.4
2,462,311 - Dsui_2305 0.43 -0.9
2,462,439 - Dsui_2305 0.60 -1.0
2,462,458 - Dsui_2305 0.63 -1.7
2,462,690 + -0.0
2,462,747 + +2.0
2,462,747 + -0.0
2,462,755 - -2.2
2,462,755 - -0.9
2,462,755 - -1.3
2,462,755 - -0.2
2,462,755 - -0.2
2,462,788 + -1.1
2,462,796 - -0.4
2,462,806 + +0.9
2,462,814 - -0.1
2,462,814 - +0.2
2,462,820 + +0.8
2,462,828 - +0.4
2,462,830 + +1.0
2,462,838 - +0.1
2,462,870 - -0.4

Or see this region's nucleotide sequence