Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2162 and Dsui_2163 are separated by 282 nucleotides Dsui_2163 and Dsui_2164 are separated by 146 nucleotides Dsui_2164 and Dsui_2165 are separated by 264 nucleotides Dsui_2165 and Dsui_2166 overlap by 14 nucleotides
Dsui_2162: Dsui_2162 - hypothetical protein, at 2,297,499 to 2,298,074
_2162
Dsui_2163: Dsui_2163 - putative Fe-S oxidoreductase, at 2,298,357 to 2,298,773
_2163
Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968
_2164
Dsui_2165: Dsui_2165 - RNA polymerase sigma factor, sigma-70 family, at 2,301,233 to 2,301,748
_2165
Dsui_2166: Dsui_2166 - Fe2+-dicitrate sensor, membrane component, at 2,301,735 to 2,302,670
_2166
Position (kb)
2298
2299
2300
2301 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2297.975 kb on - strand at 2298.093 kb on + strand at 2298.144 kb on + strand at 2298.144 kb on + strand at 2298.147 kb on - strand at 2298.147 kb on - strand at 2298.151 kb on + strand at 2298.206 kb on + strand at 2298.342 kb on + strand at 2298.360 kb on + strand at 2298.488 kb on - strand, within Dsui_2163 at 2298.494 kb on + strand, within Dsui_2163 at 2298.524 kb on - strand at 2298.716 kb on + strand, within Dsui_2163 at 2298.771 kb on - strand at 2298.819 kb on - strand at 2298.964 kb on + strand at 2299.084 kb on - strand at 2299.200 kb on - strand at 2299.217 kb on + strand at 2299.280 kb on - strand at 2299.282 kb on + strand at 2299.282 kb on + strand, within Dsui_2164 at 2299.290 kb on - strand at 2299.488 kb on + strand at 2299.657 kb on + strand at 2299.665 kb on - strand, within Dsui_2164 at 2299.708 kb on - strand, within Dsui_2164 at 2299.780 kb on - strand at 2299.825 kb on - strand at 2300.068 kb on + strand at 2300.076 kb on - strand, within Dsui_2164 at 2300.144 kb on - strand at 2300.144 kb on - strand at 2300.299 kb on - strand, within Dsui_2164 at 2300.308 kb on + strand at 2300.316 kb on - strand at 2300.354 kb on - strand at 2300.498 kb on - strand, within Dsui_2164 at 2300.679 kb on - strand at 2300.781 kb on - strand at 2300.866 kb on + strand at 2300.890 kb on - strand at 2301.188 kb on - strand at 2301.429 kb on - strand at 2301.447 kb on + strand, within Dsui_2165 at 2301.502 kb on - strand at 2301.520 kb on + strand, within Dsui_2165 at 2301.616 kb on + strand, within Dsui_2165 at 2301.906 kb on + strand, within Dsui_2166 at 2301.931 kb on + strand, within Dsui_2166 at 2301.939 kb on - strand at 2301.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 2,297,975 - +1.3 2,298,093 + -1.5 2,298,144 + -0.3 2,298,144 + -0.4 2,298,147 - -0.1 2,298,147 - +0.8 2,298,151 + +2.5 2,298,206 + +1.1 2,298,342 + +1.5 2,298,360 + -0.0 2,298,488 - Dsui_2163 0.31 +1.1 2,298,494 + Dsui_2163 0.33 +0.7 2,298,524 - +2.1 2,298,716 + Dsui_2163 0.86 -0.6 2,298,771 - +2.8 2,298,819 - -1.3 2,298,964 + +2.3 2,299,084 - +0.3 2,299,200 - +2.1 2,299,217 + +2.1 2,299,280 - -0.7 2,299,282 + +2.1 2,299,282 + Dsui_2164 0.18 -0.9 2,299,290 - +2.1 2,299,488 + -0.7 2,299,657 + +0.5 2,299,665 - Dsui_2164 0.36 -0.9 2,299,708 - Dsui_2164 0.38 -0.1 2,299,780 - +0.5 2,299,825 - +1.1 2,300,068 + +0.5 2,300,076 - Dsui_2164 0.56 -0.3 2,300,144 - -0.3 2,300,144 - +2.1 2,300,299 - Dsui_2164 0.67 +0.8 2,300,308 + +0.5 2,300,316 - +1.5 2,300,354 - +1.1 2,300,498 - Dsui_2164 0.77 -0.9 2,300,679 - +1.1 2,300,781 - +0.3 2,300,866 + +0.5 2,300,890 - +0.5 2,301,188 - +1.1 2,301,429 - +3.1 2,301,447 + Dsui_2165 0.41 -1.3 2,301,502 - -0.5 2,301,520 + Dsui_2165 0.56 +1.1 2,301,616 + Dsui_2165 0.74 +0.1 2,301,906 + Dsui_2166 0.18 +0.4 2,301,931 + Dsui_2166 0.21 +0.2 2,301,939 - +2.1 2,301,939 - +0.1
Or see this region's nucleotide sequence