Strain Fitness in Dechlorosoma suillum PS around Dsui_2164

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2162 and Dsui_2163 are separated by 282 nucleotidesDsui_2163 and Dsui_2164 are separated by 146 nucleotidesDsui_2164 and Dsui_2165 are separated by 264 nucleotidesDsui_2165 and Dsui_2166 overlap by 14 nucleotides Dsui_2162: Dsui_2162 - hypothetical protein, at 2,297,499 to 2,298,074 _2162 Dsui_2163: Dsui_2163 - putative Fe-S oxidoreductase, at 2,298,357 to 2,298,773 _2163 Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968 _2164 Dsui_2165: Dsui_2165 - RNA polymerase sigma factor, sigma-70 family, at 2,301,233 to 2,301,748 _2165 Dsui_2166: Dsui_2166 - Fe2+-dicitrate sensor, membrane component, at 2,301,735 to 2,302,670 _2166 Position (kb) 2298 2299 2300 2301Strain fitness (log2 ratio) -1 0 1 2 3at 2297.975 kb on - strandat 2298.093 kb on + strandat 2298.144 kb on + strandat 2298.144 kb on + strandat 2298.147 kb on - strandat 2298.147 kb on - strandat 2298.151 kb on + strandat 2298.206 kb on + strandat 2298.342 kb on + strandat 2298.360 kb on + strandat 2298.488 kb on - strand, within Dsui_2163at 2298.494 kb on + strand, within Dsui_2163at 2298.524 kb on - strandat 2298.716 kb on + strand, within Dsui_2163at 2298.771 kb on - strandat 2298.819 kb on - strandat 2298.964 kb on + strandat 2299.084 kb on - strandat 2299.200 kb on - strandat 2299.217 kb on + strandat 2299.280 kb on - strandat 2299.282 kb on + strandat 2299.282 kb on + strand, within Dsui_2164at 2299.290 kb on - strandat 2299.488 kb on + strandat 2299.657 kb on + strandat 2299.665 kb on - strand, within Dsui_2164at 2299.708 kb on - strand, within Dsui_2164at 2299.780 kb on - strandat 2299.825 kb on - strandat 2300.068 kb on + strandat 2300.076 kb on - strand, within Dsui_2164at 2300.144 kb on - strandat 2300.144 kb on - strandat 2300.299 kb on - strand, within Dsui_2164at 2300.308 kb on + strandat 2300.316 kb on - strandat 2300.354 kb on - strandat 2300.498 kb on - strand, within Dsui_2164at 2300.679 kb on - strandat 2300.781 kb on - strandat 2300.866 kb on + strandat 2300.890 kb on - strandat 2301.188 kb on - strandat 2301.429 kb on - strandat 2301.447 kb on + strand, within Dsui_2165at 2301.502 kb on - strandat 2301.520 kb on + strand, within Dsui_2165at 2301.616 kb on + strand, within Dsui_2165at 2301.906 kb on + strand, within Dsui_2166at 2301.931 kb on + strand, within Dsui_2166at 2301.939 kb on - strandat 2301.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,297,975 - +1.3
2,298,093 + -1.5
2,298,144 + -0.3
2,298,144 + -0.4
2,298,147 - -0.1
2,298,147 - +0.8
2,298,151 + +2.5
2,298,206 + +1.1
2,298,342 + +1.5
2,298,360 + -0.0
2,298,488 - Dsui_2163 0.31 +1.1
2,298,494 + Dsui_2163 0.33 +0.7
2,298,524 - +2.1
2,298,716 + Dsui_2163 0.86 -0.6
2,298,771 - +2.8
2,298,819 - -1.3
2,298,964 + +2.3
2,299,084 - +0.3
2,299,200 - +2.1
2,299,217 + +2.1
2,299,280 - -0.7
2,299,282 + +2.1
2,299,282 + Dsui_2164 0.18 -0.9
2,299,290 - +2.1
2,299,488 + -0.7
2,299,657 + +0.5
2,299,665 - Dsui_2164 0.36 -0.9
2,299,708 - Dsui_2164 0.38 -0.1
2,299,780 - +0.5
2,299,825 - +1.1
2,300,068 + +0.5
2,300,076 - Dsui_2164 0.56 -0.3
2,300,144 - -0.3
2,300,144 - +2.1
2,300,299 - Dsui_2164 0.67 +0.8
2,300,308 + +0.5
2,300,316 - +1.5
2,300,354 - +1.1
2,300,498 - Dsui_2164 0.77 -0.9
2,300,679 - +1.1
2,300,781 - +0.3
2,300,866 + +0.5
2,300,890 - +0.5
2,301,188 - +1.1
2,301,429 - +3.1
2,301,447 + Dsui_2165 0.41 -1.3
2,301,502 - -0.5
2,301,520 + Dsui_2165 0.56 +1.1
2,301,616 + Dsui_2165 0.74 +0.1
2,301,906 + Dsui_2166 0.18 +0.4
2,301,931 + Dsui_2166 0.21 +0.2
2,301,939 - +2.1
2,301,939 - +0.1

Or see this region's nucleotide sequence