Strain Fitness in Dechlorosoma suillum PS around Dsui_2137

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2136 and Dsui_2137 are separated by 132 nucleotidesDsui_2137 and Dsui_2138 are separated by 35 nucleotidesDsui_2138 and Dsui_2139 are separated by 136 nucleotides Dsui_2136: Dsui_2136 - Fe-S oxidoreductase, at 2,265,531 to 2,266,382 _2136 Dsui_2137: Dsui_2137 - queuosine biosynthesis protein QueD, at 2,266,515 to 2,266,961 _2137 Dsui_2138: Dsui_2138 - putative esterase, at 2,266,997 to 2,267,665 _2138 Dsui_2139: Dsui_2139 - Protein of unknown function (DUF3348), at 2,267,802 to 2,268,530 _2139 Position (kb) 2266 2267Strain fitness (log2 ratio) -1 0 1 2at 2266.422 kb on - strandat 2266.515 kb on + strandat 2266.518 kb on + strandat 2266.715 kb on + strand, within Dsui_2137at 2266.790 kb on + strand, within Dsui_2137at 2266.808 kb on + strand, within Dsui_2137at 2266.960 kb on + strandat 2266.987 kb on + strandat 2267.040 kb on + strandat 2267.045 kb on + strandat 2267.073 kb on - strandat 2267.118 kb on + strand, within Dsui_2138at 2267.232 kb on + strand, within Dsui_2138at 2267.497 kb on + strand, within Dsui_2138at 2267.610 kb on + strandat 2267.707 kb on - strandat 2267.744 kb on + strandat 2267.745 kb on + strandat 2267.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,266,422 - -0.7
2,266,515 + +0.4
2,266,518 + -0.4
2,266,715 + Dsui_2137 0.45 -1.1
2,266,790 + Dsui_2137 0.62 -1.0
2,266,808 + Dsui_2137 0.66 +0.5
2,266,960 + +0.2
2,266,987 + +0.2
2,267,040 + +0.0
2,267,045 + -0.5
2,267,073 - +2.1
2,267,118 + Dsui_2138 0.18 -0.1
2,267,232 + Dsui_2138 0.35 +1.2
2,267,497 + Dsui_2138 0.75 +0.2
2,267,610 + -0.2
2,267,707 - +0.5
2,267,744 + -0.3
2,267,745 + +0.2
2,267,799 - +2.1

Or see this region's nucleotide sequence