Strain Fitness in Dechlorosoma suillum PS around Dsui_1954

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1953 and Dsui_1954 are separated by 3 nucleotidesDsui_1954 and Dsui_1955 are separated by 5 nucleotidesDsui_1955 and Dsui_1956 overlap by 4 nucleotides Dsui_1953: Dsui_1953 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 2,064,896 to 2,065,888 _1953 Dsui_1954: Dsui_1954 - cysteine synthase B, at 2,065,892 to 2,066,791 _1954 Dsui_1955: Dsui_1955 - 3'-5' exonuclease, at 2,066,797 to 2,067,594 _1955 Dsui_1956: Dsui_1956 - Rhodanese-related sulfurtransferase, at 2,067,591 to 2,068,034 _1956 Position (kb) 2065 2066 2067Strain fitness (log2 ratio) -2 -1 0 1at 2066.794 kb on - strandat 2066.831 kb on + strandat 2066.906 kb on + strand, within Dsui_1955at 2066.906 kb on + strand, within Dsui_1955at 2066.976 kb on + strand, within Dsui_1955at 2066.978 kb on + strand, within Dsui_1955at 2067.176 kb on + strand, within Dsui_1955at 2067.176 kb on + strand, within Dsui_1955at 2067.327 kb on + strand, within Dsui_1955at 2067.351 kb on + strand, within Dsui_1955at 2067.432 kb on + strand, within Dsui_1955at 2067.437 kb on + strand, within Dsui_1955at 2067.444 kb on + strand, within Dsui_1955at 2067.476 kb on - strand, within Dsui_1955at 2067.643 kb on + strand, within Dsui_1956at 2067.651 kb on - strandat 2067.651 kb on - strand, within Dsui_1956at 2067.682 kb on + strand, within Dsui_1956at 2067.715 kb on + strand, within Dsui_1956at 2067.723 kb on + strand, within Dsui_1956at 2067.768 kb on - strand, within Dsui_1956

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,066,794 - -0.9
2,066,831 + -0.7
2,066,906 + Dsui_1955 0.14 -0.4
2,066,906 + Dsui_1955 0.14 -0.7
2,066,976 + Dsui_1955 0.22 -1.1
2,066,978 + Dsui_1955 0.23 -0.9
2,067,176 + Dsui_1955 0.47 -0.9
2,067,176 + Dsui_1955 0.47 -1.9
2,067,327 + Dsui_1955 0.66 +0.9
2,067,351 + Dsui_1955 0.69 -1.1
2,067,432 + Dsui_1955 0.80 +0.5
2,067,437 + Dsui_1955 0.80 -2.1
2,067,444 + Dsui_1955 0.81 -0.8
2,067,476 - Dsui_1955 0.85 -0.7
2,067,643 + Dsui_1956 0.12 -0.2
2,067,651 - +0.5
2,067,651 - Dsui_1956 0.14 +0.9
2,067,682 + Dsui_1956 0.20 +0.1
2,067,715 + Dsui_1956 0.28 +0.1
2,067,723 + Dsui_1956 0.30 +0.1
2,067,768 - Dsui_1956 0.40 +0.9

Or see this region's nucleotide sequence