Strain Fitness in Dechlorosoma suillum PS around Dsui_1463

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1461 and Dsui_1462 overlap by 4 nucleotidesDsui_1462 and Dsui_1463 are separated by 107 nucleotidesDsui_1463 and Dsui_1464 are separated by 300 nucleotides Dsui_1461: Dsui_1461 - RND family efflux transporter, MFP subunit, at 1,520,429 to 1,521,598 _1461 Dsui_1462: Dsui_1462 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,521,595 to 1,522,398 _1462 Dsui_1463: Dsui_1463 - transcriptional activator of acetoin/glycerol metabolism, at 1,522,506 to 1,524,446 _1463 Dsui_1464: Dsui_1464 - NAD-dependent aldehyde dehydrogenase, at 1,524,747 to 1,526,267 _1464 Position (kb) 1522 1523 1524 1525Strain fitness (log2 ratio) -1 0 1 2at 1521.577 kb on + strandat 1521.869 kb on + strand, within Dsui_1462at 1522.292 kb on - strand, within Dsui_1462at 1522.530 kb on + strandat 1522.558 kb on - strandat 1522.671 kb on - strandat 1522.845 kb on - strandat 1522.871 kb on + strand, within Dsui_1463at 1522.880 kb on - strand, within Dsui_1463at 1522.995 kb on - strand, within Dsui_1463at 1523.035 kb on + strand, within Dsui_1463at 1523.241 kb on + strandat 1523.348 kb on - strand, within Dsui_1463at 1523.360 kb on + strand, within Dsui_1463at 1523.379 kb on - strand, within Dsui_1463at 1523.602 kb on - strandat 1523.677 kb on + strand, within Dsui_1463at 1523.832 kb on + strandat 1523.863 kb on - strandat 1523.863 kb on - strandat 1523.939 kb on + strand, within Dsui_1463at 1524.023 kb on - strand, within Dsui_1463at 1524.025 kb on + strand, within Dsui_1463at 1524.083 kb on - strandat 1524.175 kb on + strand, within Dsui_1463at 1524.183 kb on - strandat 1524.195 kb on - strand, within Dsui_1463at 1524.216 kb on - strand, within Dsui_1463at 1524.302 kb on + strandat 1524.520 kb on + strandat 1524.540 kb on - strandat 1524.540 kb on - strandat 1524.715 kb on + strandat 1524.718 kb on - strandat 1524.783 kb on + strandat 1524.867 kb on + strandat 1524.883 kb on + strandat 1524.889 kb on - strandat 1524.890 kb on - strandat 1525.061 kb on - strand, within Dsui_1464at 1525.206 kb on + strand, within Dsui_1464at 1525.243 kb on + strand, within Dsui_1464at 1525.380 kb on - strandat 1525.391 kb on + strand, within Dsui_1464

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,521,577 + -0.0
1,521,869 + Dsui_1462 0.34 -0.0
1,522,292 - Dsui_1462 0.87 -0.4
1,522,530 + -0.8
1,522,558 - +0.6
1,522,671 - +0.2
1,522,845 - +0.4
1,522,871 + Dsui_1463 0.19 -1.1
1,522,880 - Dsui_1463 0.19 -0.3
1,522,995 - Dsui_1463 0.25 -0.7
1,523,035 + Dsui_1463 0.27 -0.1
1,523,241 + +0.0
1,523,348 - Dsui_1463 0.43 -0.9
1,523,360 + Dsui_1463 0.44 +0.6
1,523,379 - Dsui_1463 0.45 +1.5
1,523,602 - +0.0
1,523,677 + Dsui_1463 0.60 +0.2
1,523,832 + +0.0
1,523,863 - +1.7
1,523,863 - +0.7
1,523,939 + Dsui_1463 0.74 -1.7
1,524,023 - Dsui_1463 0.78 +1.3
1,524,025 + Dsui_1463 0.78 +0.0
1,524,083 - +2.0
1,524,175 + Dsui_1463 0.86 -1.4
1,524,183 - +0.0
1,524,195 - Dsui_1463 0.87 -0.8
1,524,216 - Dsui_1463 0.88 -1.4
1,524,302 + +0.7
1,524,520 + +0.9
1,524,540 - -0.6
1,524,540 - +1.4
1,524,715 + -0.3
1,524,718 - -0.6
1,524,783 + +0.4
1,524,867 + +0.8
1,524,883 + +1.8
1,524,889 - -0.3
1,524,890 - +0.4
1,525,061 - Dsui_1464 0.21 -1.0
1,525,206 + Dsui_1464 0.30 -1.0
1,525,243 + Dsui_1464 0.33 -0.6
1,525,380 - -0.8
1,525,391 + Dsui_1464 0.42 -0.4

Or see this region's nucleotide sequence