Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1446 and Dsui_1447 are separated by 212 nucleotides Dsui_1447 and Dsui_1448 are separated by 2 nucleotides Dsui_1448 and Dsui_1449 are separated by 233 nucleotides
Dsui_1446: Dsui_1446 - succinyl-CoA synthetase, alpha subunit, at 1,501,464 to 1,502,360
_1446
Dsui_1447: Dsui_1447 - integral membrane protein, YjbE family, at 1,502,573 to 1,503,274
_1447
Dsui_1448: Dsui_1448 - putative ornithine cyclodeaminase, mu-crystallin, at 1,503,277 to 1,504,248
_1448
Dsui_1449: Dsui_1449 - protein kinase family protein, at 1,504,482 to 1,506,998
_1449
Position (kb)
1503
1504
1505 Strain fitness (log2 ratio)
-1
0
1 at 1502.502 kb on - strand at 1502.523 kb on - strand at 1502.540 kb on + strand at 1502.628 kb on - strand at 1502.686 kb on + strand, within Dsui_1447 at 1502.744 kb on - strand, within Dsui_1447 at 1502.761 kb on - strand, within Dsui_1447 at 1502.793 kb on + strand, within Dsui_1447 at 1502.898 kb on - strand, within Dsui_1447 at 1502.898 kb on - strand, within Dsui_1447 at 1503.400 kb on + strand, within Dsui_1448 at 1503.430 kb on + strand, within Dsui_1448 at 1503.438 kb on - strand at 1503.492 kb on - strand, within Dsui_1448 at 1503.558 kb on - strand at 1503.761 kb on - strand, within Dsui_1448 at 1503.783 kb on + strand, within Dsui_1448 at 1503.847 kb on - strand, within Dsui_1448 at 1503.904 kb on - strand, within Dsui_1448 at 1503.910 kb on + strand, within Dsui_1448 at 1504.012 kb on + strand, within Dsui_1448 at 1504.187 kb on + strand at 1504.219 kb on - strand at 1504.337 kb on + strand at 1504.343 kb on - strand at 1504.343 kb on - strand at 1504.451 kb on + strand at 1504.492 kb on - strand at 1504.499 kb on + strand at 1504.618 kb on + strand at 1504.618 kb on + strand at 1504.742 kb on + strand, within Dsui_1449 at 1504.772 kb on - strand, within Dsui_1449 at 1504.794 kb on + strand, within Dsui_1449 at 1504.916 kb on - strand, within Dsui_1449 at 1505.044 kb on + strand, within Dsui_1449 at 1505.125 kb on - strand, within Dsui_1449 at 1505.128 kb on + strand, within Dsui_1449 at 1505.160 kb on + strand, within Dsui_1449
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 1,502,502 - -0.6 1,502,523 - +0.2 1,502,540 + -0.3 1,502,628 - +0.4 1,502,686 + Dsui_1447 0.16 -0.4 1,502,744 - Dsui_1447 0.24 -0.8 1,502,761 - Dsui_1447 0.27 +0.2 1,502,793 + Dsui_1447 0.31 -0.4 1,502,898 - Dsui_1447 0.46 +0.0 1,502,898 - Dsui_1447 0.46 -0.0 1,503,400 + Dsui_1448 0.13 -0.7 1,503,430 + Dsui_1448 0.16 -0.6 1,503,438 - -0.3 1,503,492 - Dsui_1448 0.22 -0.3 1,503,558 - +0.0 1,503,761 - Dsui_1448 0.50 -1.1 1,503,783 + Dsui_1448 0.52 -0.1 1,503,847 - Dsui_1448 0.59 -0.4 1,503,904 - Dsui_1448 0.65 -0.1 1,503,910 + Dsui_1448 0.65 -0.4 1,504,012 + Dsui_1448 0.76 -1.1 1,504,187 + +0.4 1,504,219 - +0.3 1,504,337 + +0.6 1,504,343 - +0.3 1,504,343 - +0.3 1,504,451 + -0.3 1,504,492 - +0.7 1,504,499 + -0.9 1,504,618 + +0.2 1,504,618 + -0.6 1,504,742 + Dsui_1449 0.10 +0.1 1,504,772 - Dsui_1449 0.12 -0.1 1,504,794 + Dsui_1449 0.12 -0.8 1,504,916 - Dsui_1449 0.17 -0.6 1,505,044 + Dsui_1449 0.22 -0.3 1,505,125 - Dsui_1449 0.26 +0.3 1,505,128 + Dsui_1449 0.26 -0.4 1,505,160 + Dsui_1449 0.27 +0.3
Or see this region's nucleotide sequence