Strain Fitness in Dechlorosoma suillum PS around Dsui_1448

Experiment: defined media with 30 mM sodium lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1446 and Dsui_1447 are separated by 212 nucleotidesDsui_1447 and Dsui_1448 are separated by 2 nucleotidesDsui_1448 and Dsui_1449 are separated by 233 nucleotides Dsui_1446: Dsui_1446 - succinyl-CoA synthetase, alpha subunit, at 1,501,464 to 1,502,360 _1446 Dsui_1447: Dsui_1447 - integral membrane protein, YjbE family, at 1,502,573 to 1,503,274 _1447 Dsui_1448: Dsui_1448 - putative ornithine cyclodeaminase, mu-crystallin, at 1,503,277 to 1,504,248 _1448 Dsui_1449: Dsui_1449 - protein kinase family protein, at 1,504,482 to 1,506,998 _1449 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -1 0 1at 1502.502 kb on - strandat 1502.523 kb on - strandat 1502.540 kb on + strandat 1502.628 kb on - strandat 1502.686 kb on + strand, within Dsui_1447at 1502.744 kb on - strand, within Dsui_1447at 1502.761 kb on - strand, within Dsui_1447at 1502.793 kb on + strand, within Dsui_1447at 1502.898 kb on - strand, within Dsui_1447at 1502.898 kb on - strand, within Dsui_1447at 1503.400 kb on + strand, within Dsui_1448at 1503.430 kb on + strand, within Dsui_1448at 1503.438 kb on - strandat 1503.492 kb on - strand, within Dsui_1448at 1503.558 kb on - strandat 1503.761 kb on - strand, within Dsui_1448at 1503.783 kb on + strand, within Dsui_1448at 1503.847 kb on - strand, within Dsui_1448at 1503.904 kb on - strand, within Dsui_1448at 1503.910 kb on + strand, within Dsui_1448at 1504.012 kb on + strand, within Dsui_1448at 1504.187 kb on + strandat 1504.219 kb on - strandat 1504.337 kb on + strandat 1504.343 kb on - strandat 1504.343 kb on - strandat 1504.451 kb on + strandat 1504.492 kb on - strandat 1504.499 kb on + strandat 1504.618 kb on + strandat 1504.618 kb on + strandat 1504.742 kb on + strand, within Dsui_1449at 1504.772 kb on - strand, within Dsui_1449at 1504.794 kb on + strand, within Dsui_1449at 1504.916 kb on - strand, within Dsui_1449at 1505.044 kb on + strand, within Dsui_1449at 1505.125 kb on - strand, within Dsui_1449at 1505.128 kb on + strand, within Dsui_1449at 1505.160 kb on + strand, within Dsui_1449

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
remove
1,502,502 - -0.6
1,502,523 - +0.2
1,502,540 + -0.3
1,502,628 - +0.4
1,502,686 + Dsui_1447 0.16 -0.4
1,502,744 - Dsui_1447 0.24 -0.8
1,502,761 - Dsui_1447 0.27 +0.2
1,502,793 + Dsui_1447 0.31 -0.4
1,502,898 - Dsui_1447 0.46 +0.0
1,502,898 - Dsui_1447 0.46 -0.0
1,503,400 + Dsui_1448 0.13 -0.7
1,503,430 + Dsui_1448 0.16 -0.6
1,503,438 - -0.3
1,503,492 - Dsui_1448 0.22 -0.3
1,503,558 - +0.0
1,503,761 - Dsui_1448 0.50 -1.1
1,503,783 + Dsui_1448 0.52 -0.1
1,503,847 - Dsui_1448 0.59 -0.4
1,503,904 - Dsui_1448 0.65 -0.1
1,503,910 + Dsui_1448 0.65 -0.4
1,504,012 + Dsui_1448 0.76 -1.1
1,504,187 + +0.4
1,504,219 - +0.3
1,504,337 + +0.6
1,504,343 - +0.3
1,504,343 - +0.3
1,504,451 + -0.3
1,504,492 - +0.7
1,504,499 + -0.9
1,504,618 + +0.2
1,504,618 + -0.6
1,504,742 + Dsui_1449 0.10 +0.1
1,504,772 - Dsui_1449 0.12 -0.1
1,504,794 + Dsui_1449 0.12 -0.8
1,504,916 - Dsui_1449 0.17 -0.6
1,505,044 + Dsui_1449 0.22 -0.3
1,505,125 - Dsui_1449 0.26 +0.3
1,505,128 + Dsui_1449 0.26 -0.4
1,505,160 + Dsui_1449 0.27 +0.3

Or see this region's nucleotide sequence