Strain Fitness in Dechlorosoma suillum PS around Dsui_1392

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1391 and Dsui_1392 are separated by 3 nucleotidesDsui_1392 and Dsui_1393 are separated by 9 nucleotides Dsui_1391: Dsui_1391 - hypothetical protein, at 1,448,097 to 1,449,641 _1391 Dsui_1392: Dsui_1392 - type II secretory pathway, component PulF, at 1,449,645 to 1,450,844 _1392 Dsui_1393: Dsui_1393 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,450,854 to 1,452,560 _1393 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1448.651 kb on - strand, within Dsui_1391at 1448.659 kb on + strand, within Dsui_1391at 1448.711 kb on + strand, within Dsui_1391at 1448.736 kb on - strandat 1448.961 kb on + strand, within Dsui_1391at 1449.197 kb on + strand, within Dsui_1391at 1449.424 kb on + strand, within Dsui_1391at 1449.449 kb on + strand, within Dsui_1391at 1449.535 kb on - strandat 1449.590 kb on - strandat 1449.643 kb on + strandat 1449.812 kb on + strand, within Dsui_1392at 1449.906 kb on + strand, within Dsui_1392at 1449.975 kb on - strandat 1450.036 kb on - strand, within Dsui_1392at 1450.236 kb on + strand, within Dsui_1392at 1450.244 kb on - strand, within Dsui_1392at 1450.292 kb on + strand, within Dsui_1392at 1450.328 kb on - strand, within Dsui_1392at 1450.457 kb on + strand, within Dsui_1392at 1450.476 kb on - strand, within Dsui_1392at 1450.479 kb on + strand, within Dsui_1392at 1450.541 kb on + strandat 1450.545 kb on - strandat 1450.697 kb on + strandat 1450.719 kb on + strandat 1450.720 kb on + strand, within Dsui_1392at 1450.727 kb on - strandat 1450.853 kb on - strandat 1450.857 kb on + strandat 1450.872 kb on + strandat 1450.901 kb on + strandat 1450.909 kb on - strandat 1450.988 kb on - strandat 1451.348 kb on + strandat 1451.399 kb on - strandat 1451.639 kb on + strandat 1451.639 kb on + strand, within Dsui_1393at 1451.639 kb on + strandat 1451.647 kb on - strandat 1451.656 kb on + strandat 1451.668 kb on + strand, within Dsui_1393at 1451.668 kb on - strand, within Dsui_1393

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,448,651 - Dsui_1391 0.36 +0.7
1,448,659 + Dsui_1391 0.36 -0.8
1,448,711 + Dsui_1391 0.40 -0.9
1,448,736 - -0.6
1,448,961 + Dsui_1391 0.56 -1.4
1,449,197 + Dsui_1391 0.71 -0.7
1,449,424 + Dsui_1391 0.86 +0.2
1,449,449 + Dsui_1391 0.88 -0.8
1,449,535 - +2.0
1,449,590 - -2.1
1,449,643 + +1.0
1,449,812 + Dsui_1392 0.14 -0.6
1,449,906 + Dsui_1392 0.22 +0.7
1,449,975 - +1.0
1,450,036 - Dsui_1392 0.33 +2.0
1,450,236 + Dsui_1392 0.49 -0.3
1,450,244 - Dsui_1392 0.50 -0.0
1,450,292 + Dsui_1392 0.54 -2.0
1,450,328 - Dsui_1392 0.57 +0.2
1,450,457 + Dsui_1392 0.68 -1.8
1,450,476 - Dsui_1392 0.69 -1.1
1,450,479 + Dsui_1392 0.69 -0.1
1,450,541 + +0.2
1,450,545 - +0.4
1,450,697 + +1.0
1,450,719 + +2.6
1,450,720 + Dsui_1392 0.90 -1.9
1,450,727 - -0.7
1,450,853 - +2.0
1,450,857 + -2.3
1,450,872 + -0.6
1,450,901 + -0.6
1,450,909 - +0.3
1,450,988 - +0.6
1,451,348 + -0.6
1,451,399 - -0.8
1,451,639 + +2.0
1,451,639 + Dsui_1393 0.46 +0.0
1,451,639 + +0.4
1,451,647 - +0.2
1,451,656 + +3.6
1,451,668 + Dsui_1393 0.48 -0.1
1,451,668 - Dsui_1393 0.48 +0.9

Or see this region's nucleotide sequence