Strain Fitness in Dechlorosoma suillum PS around Dsui_1098

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1097 and Dsui_1098 are separated by 108 nucleotidesDsui_1098 and Dsui_1099 are separated by 57 nucleotides Dsui_1097: Dsui_1097 - NADH/NADPH-dependent glutamate synthase small subunit, at 1,139,961 to 1,141,427 _1097 Dsui_1098: Dsui_1098 - hypothetical protein, at 1,141,536 to 1,142,249 _1098 Dsui_1099: Dsui_1099 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 1,142,307 to 1,143,665 _1099 Position (kb) 1141 1142 1143Strain fitness (log2 ratio) -3 -2 -1 0 1at 1140.539 kb on + strand, within Dsui_1097at 1140.656 kb on + strand, within Dsui_1097at 1140.829 kb on - strand, within Dsui_1097at 1140.934 kb on - strand, within Dsui_1097at 1140.979 kb on - strandat 1141.031 kb on - strand, within Dsui_1097at 1141.093 kb on + strand, within Dsui_1097at 1141.110 kb on + strand, within Dsui_1097at 1141.196 kb on - strand, within Dsui_1097at 1141.222 kb on + strand, within Dsui_1097at 1141.677 kb on + strand, within Dsui_1098at 1141.765 kb on + strand, within Dsui_1098at 1141.827 kb on + strand, within Dsui_1098at 1141.901 kb on + strand, within Dsui_1098at 1142.116 kb on - strand, within Dsui_1098at 1142.171 kb on + strand, within Dsui_1098at 1142.256 kb on + strandat 1142.256 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,140,539 + Dsui_1097 0.39 -2.9
1,140,656 + Dsui_1097 0.47 -1.9
1,140,829 - Dsui_1097 0.59 +0.4
1,140,934 - Dsui_1097 0.66 -1.3
1,140,979 - -0.3
1,141,031 - Dsui_1097 0.73 -0.6
1,141,093 + Dsui_1097 0.77 -1.3
1,141,110 + Dsui_1097 0.78 -0.6
1,141,196 - Dsui_1097 0.84 -1.9
1,141,222 + Dsui_1097 0.86 -0.3
1,141,677 + Dsui_1098 0.20 +0.4
1,141,765 + Dsui_1098 0.32 -0.3
1,141,827 + Dsui_1098 0.41 -0.2
1,141,901 + Dsui_1098 0.51 -0.2
1,142,116 - Dsui_1098 0.81 +0.4
1,142,171 + Dsui_1098 0.89 +1.6
1,142,256 + -0.1
1,142,256 + +0.6

Or see this region's nucleotide sequence