Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0037 and Dsui_0038 are separated by 85 nucleotides Dsui_0038 and Dsui_0039 are separated by 102 nucleotides Dsui_0039 and Dsui_0040 are separated by 185 nucleotides
Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840
_0037
Dsui_0038: Dsui_0038 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 34,926 to 35,336
_0038
Dsui_0039: Dsui_0039 - dimethyladenosine transferase, at 35,439 to 36,215
_0039
Dsui_0040: Dsui_0040 - FAD-dependent dehydrogenase, at 36,401 to 38,029
_0040
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.461 kb on - strand, within Dsui_0037 at 34.476 kb on - strand, within Dsui_0037 at 34.482 kb on - strand, within Dsui_0037 at 34.611 kb on + strand at 34.721 kb on - strand at 34.761 kb on - strand at 34.810 kb on - strand at 34.860 kb on - strand at 34.876 kb on + strand at 34.890 kb on + strand at 34.890 kb on + strand at 34.890 kb on + strand at 34.890 kb on + strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.923 kb on + strand at 34.923 kb on + strand at 34.931 kb on - strand at 34.972 kb on + strand, within Dsui_0038 at 34.972 kb on + strand, within Dsui_0038 at 35.019 kb on + strand, within Dsui_0038 at 35.027 kb on - strand at 35.139 kb on + strand, within Dsui_0038 at 35.149 kb on + strand, within Dsui_0038 at 35.155 kb on + strand, within Dsui_0038 at 35.259 kb on + strand, within Dsui_0038 at 35.413 kb on - strand at 35.466 kb on + strand at 35.554 kb on + strand, within Dsui_0039 at 35.714 kb on + strand, within Dsui_0039 at 35.794 kb on + strand, within Dsui_0039 at 35.802 kb on + strand, within Dsui_0039 at 35.971 kb on + strand, within Dsui_0039 at 36.088 kb on + strand, within Dsui_0039 at 36.096 kb on - strand at 36.186 kb on + strand at 36.193 kb on - strand at 36.354 kb on + strand at 36.377 kb on + strand at 36.385 kb on - strand at 36.391 kb on + strand at 36.427 kb on + strand at 36.436 kb on - strand at 36.436 kb on - strand at 36.449 kb on + strand at 36.449 kb on + strand at 36.457 kb on - strand at 36.486 kb on - strand at 36.502 kb on + strand at 36.510 kb on - strand at 36.525 kb on + strand at 36.533 kb on - strand at 36.533 kb on - strand at 36.693 kb on + strand, within Dsui_0040 at 36.708 kb on + strand, within Dsui_0040 at 36.754 kb on - strand, within Dsui_0040 at 36.789 kb on - strand, within Dsui_0040 at 36.808 kb on + strand, within Dsui_0040 at 36.821 kb on - strand, within Dsui_0040 at 36.826 kb on + strand, within Dsui_0040 at 36.826 kb on - strand, within Dsui_0040 at 36.921 kb on - strand, within Dsui_0040 at 37.014 kb on + strand, within Dsui_0040 at 37.048 kb on + strand, within Dsui_0040 at 37.048 kb on + strand, within Dsui_0040 at 37.056 kb on - strand, within Dsui_0040 at 37.133 kb on + strand, within Dsui_0040 at 37.195 kb on + strand, within Dsui_0040
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 34,461 - Dsui_0037 0.69 +1.4 34,476 - Dsui_0037 0.70 -0.0 34,482 - Dsui_0037 0.70 +0.0 34,611 + -0.5 34,721 - +0.8 34,761 - +0.5 34,810 - +0.2 34,860 - +0.5 34,876 + +0.1 34,890 + +0.4 34,890 + +0.9 34,890 + +2.0 34,890 + +0.5 34,898 - +1.0 34,898 - +0.0 34,898 - +0.0 34,898 - +0.2 34,898 - +1.0 34,898 - +2.0 34,923 + -0.5 34,923 + -0.4 34,931 - +0.7 34,972 + Dsui_0038 0.11 +0.2 34,972 + Dsui_0038 0.11 -0.3 35,019 + Dsui_0038 0.23 -0.0 35,027 - +1.0 35,139 + Dsui_0038 0.52 -0.0 35,149 + Dsui_0038 0.54 +0.2 35,155 + Dsui_0038 0.56 -0.3 35,259 + Dsui_0038 0.81 -0.1 35,413 - -0.5 35,466 + -1.1 35,554 + Dsui_0039 0.15 -1.1 35,714 + Dsui_0039 0.35 -1.4 35,794 + Dsui_0039 0.46 -0.5 35,802 + Dsui_0039 0.47 -2.5 35,971 + Dsui_0039 0.68 +1.2 36,088 + Dsui_0039 0.84 -0.1 36,096 - +1.0 36,186 + -0.1 36,193 - +1.0 36,354 + +2.2 36,377 + -2.0 36,385 - +0.7 36,391 + -0.4 36,427 + +0.2 36,436 - -0.1 36,436 - +0.7 36,449 + +0.3 36,449 + -0.1 36,457 - +1.8 36,486 - +0.8 36,502 + +0.0 36,510 - -0.1 36,525 + +0.0 36,533 - -0.6 36,533 - +0.5 36,693 + Dsui_0040 0.18 +0.2 36,708 + Dsui_0040 0.19 +0.1 36,754 - Dsui_0040 0.22 +1.4 36,789 - Dsui_0040 0.24 -0.0 36,808 + Dsui_0040 0.25 +1.3 36,821 - Dsui_0040 0.26 +0.5 36,826 + Dsui_0040 0.26 +2.0 36,826 - Dsui_0040 0.26 -0.5 36,921 - Dsui_0040 0.32 +0.5 37,014 + Dsui_0040 0.38 -0.5 37,048 + Dsui_0040 0.40 +0.7 37,048 + Dsui_0040 0.40 -0.3 37,056 - Dsui_0040 0.40 +0.3 37,133 + Dsui_0040 0.45 -0.2 37,195 + Dsui_0040 0.49 +0.2
Or see this region's nucleotide sequence