Strain Fitness in Dechlorosoma suillum PS around Dsui_0025

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0023 and Dsui_0024 are separated by 153 nucleotidesDsui_0024 and Dsui_0025 are separated by 250 nucleotidesDsui_0025 and Dsui_0026 are separated by 129 nucleotides Dsui_0023: Dsui_0023 - acetylornithine/succinylornithine aminotransferase, at 20,587 to 21,777 _0023 Dsui_0024: Dsui_0024 - cytochrome c556, at 21,931 to 22,377 _0024 Dsui_0025: Dsui_0025 - hypothetical protein, at 22,628 to 23,710 _0025 Dsui_0026: Dsui_0026 - CBS domain-containing protein, at 23,840 to 25,126 _0026 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.779 kb on - strandat 21.779 kb on - strandat 21.783 kb on + strandat 21.795 kb on - strandat 21.859 kb on - strandat 21.900 kb on + strandat 22.049 kb on - strandat 22.062 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.212 kb on + strand, within Dsui_0024at 22.220 kb on - strand, within Dsui_0024at 22.220 kb on - strandat 22.221 kb on - strandat 22.223 kb on + strand, within Dsui_0024at 22.364 kb on - strandat 22.390 kb on + strandat 22.410 kb on + strandat 22.468 kb on - strandat 22.655 kb on + strandat 22.751 kb on + strandat 22.789 kb on - strandat 22.825 kb on + strandat 22.882 kb on - strandat 22.992 kb on + strand, within Dsui_0025at 23.197 kb on + strandat 23.322 kb on + strand, within Dsui_0025at 23.381 kb on + strand, within Dsui_0025at 23.577 kb on - strand, within Dsui_0025at 23.589 kb on - strandat 23.753 kb on - strandat 23.787 kb on - strandat 23.807 kb on - strandat 23.825 kb on - strandat 23.858 kb on + strandat 23.892 kb on - strandat 23.965 kb on + strandat 24.096 kb on + strand, within Dsui_0026at 24.136 kb on + strand, within Dsui_0026at 24.200 kb on - strand, within Dsui_0026at 24.204 kb on - strandat 24.215 kb on - strandat 24.230 kb on - strand, within Dsui_0026at 24.264 kb on - strand, within Dsui_0026at 24.344 kb on + strand, within Dsui_0026at 24.364 kb on - strand, within Dsui_0026at 24.364 kb on - strand, within Dsui_0026at 24.378 kb on + strand, within Dsui_0026at 24.386 kb on - strand, within Dsui_0026at 24.455 kb on - strandat 24.556 kb on + strandat 24.556 kb on - strandat 24.566 kb on - strand, within Dsui_0026at 24.615 kb on + strand, within Dsui_0026at 24.637 kb on + strand, within Dsui_0026at 24.686 kb on + strandat 24.706 kb on + strand, within Dsui_0026

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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21,779 - +2.5
21,779 - +2.0
21,783 + +1.5
21,795 - +0.6
21,859 - +1.5
21,900 + +0.8
22,049 - -0.3
22,062 + Dsui_0024 0.29 +1.3
22,212 + Dsui_0024 0.63 +0.1
22,212 + Dsui_0024 0.63 -1.8
22,212 + Dsui_0024 0.63 +0.9
22,220 - Dsui_0024 0.65 +1.8
22,220 - +1.0
22,221 - +0.0
22,223 + Dsui_0024 0.65 +0.5
22,364 - +0.5
22,390 + -0.8
22,410 + -0.2
22,468 - +1.5
22,655 + +1.5
22,751 + +0.0
22,789 - +2.0
22,825 + +0.5
22,882 - +0.5
22,992 + Dsui_0025 0.34 +0.0
23,197 + +1.6
23,322 + Dsui_0025 0.64 -0.6
23,381 + Dsui_0025 0.70 -0.8
23,577 - Dsui_0025 0.88 +0.0
23,589 - +1.0
23,753 - +0.2
23,787 - -1.3
23,807 - +0.5
23,825 - -0.3
23,858 + +0.5
23,892 - -0.7
23,965 + +0.5
24,096 + Dsui_0026 0.20 +0.9
24,136 + Dsui_0026 0.23 +1.0
24,200 - Dsui_0026 0.28 -0.0
24,204 - +0.5
24,215 - -0.5
24,230 - Dsui_0026 0.30 +0.0
24,264 - Dsui_0026 0.33 +0.0
24,344 + Dsui_0026 0.39 +0.3
24,364 - Dsui_0026 0.41 +0.3
24,364 - Dsui_0026 0.41 -0.5
24,378 + Dsui_0026 0.42 +0.2
24,386 - Dsui_0026 0.42 +1.2
24,455 - -0.5
24,556 + +0.2
24,556 - +0.5
24,566 - Dsui_0026 0.56 +0.5
24,615 + Dsui_0026 0.60 -0.4
24,637 + Dsui_0026 0.62 +0.0
24,686 + +1.6
24,706 + Dsui_0026 0.67 +0.0

Or see this region's nucleotide sequence