Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2201

Experiment: MoYLS4 with Spectinomycin 0.0125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2200 and DvMF_2201 are separated by 337 nucleotidesDvMF_2201 and DvMF_2202 are separated by 3 nucleotides DvMF_2200: DvMF_2200 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,752,398 to 2,753,777 _2200 DvMF_2201: DvMF_2201 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,754,115 to 2,755,557 _2201 DvMF_2202: DvMF_2202 - Glucose-6-phosphate isomerase (RefSeq), at 2,755,561 to 2,756,922 _2202 Position (kb) 2754 2755 2756Strain fitness (log2 ratio) -1 0 1at 2754.107 kb on + strandat 2754.115 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.0125 mg/ml
remove
2,754,107 + -0.2
2,754,115 - -0.2

Or see this region's nucleotide sequence