Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2200

Experiment: MoYLS4 with Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2199 and DvMF_2200 are separated by 288 nucleotidesDvMF_2200 and DvMF_2201 are separated by 337 nucleotides DvMF_2199: DvMF_2199 - hypothetical protein (RefSeq), at 2,751,516 to 2,752,109 _2199 DvMF_2200: DvMF_2200 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,752,398 to 2,753,777 _2200 DvMF_2201: DvMF_2201 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,754,115 to 2,755,557 _2201 Position (kb) 2752 2753 2754Strain fitness (log2 ratio) -1 0 1at 2751.573 kb on - strandat 2751.573 kb on - strandat 2751.739 kb on - strand, within DvMF_2199at 2751.784 kb on - strand, within DvMF_2199at 2751.971 kb on - strand, within DvMF_2199at 2752.022 kb on + strand, within DvMF_2199at 2752.066 kb on + strandat 2752.184 kb on + strandat 2752.221 kb on - strandat 2754.107 kb on + strandat 2754.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.0125 mg/ml
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2,751,573 - -0.8
2,751,573 - -0.5
2,751,739 - DvMF_2199 0.38 -1.6
2,751,784 - DvMF_2199 0.45 -1.2
2,751,971 - DvMF_2199 0.77 -0.4
2,752,022 + DvMF_2199 0.85 -0.7
2,752,066 + -0.4
2,752,184 + -0.3
2,752,221 - -0.1
2,754,107 + -0.2
2,754,115 - -0.2

Or see this region's nucleotide sequence