Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0539

Experiment: MoYLS4 with Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0537 and DvMF_0538 are separated by 10 nucleotidesDvMF_0538 and DvMF_0539 are separated by 68 nucleotidesDvMF_0539 and secF are separated by 256 nucleotides DvMF_0537: DvMF_0537 - Uncharacterized protein involved in biogenesis of respiratory and photosynthetic systems-like protein (RefSeq), at 632,964 to 634,211 _0537 DvMF_0538: DvMF_0538 - cytochrome c class I (RefSeq), at 634,222 to 634,530 _0538 DvMF_0539: DvMF_0539 - cytochrome c class I (RefSeq), at 634,599 to 634,925 _0539 DvMF_0540: secF - preprotein translocase subunit SecF (RefSeq), at 635,182 to 636,267 secF Position (kb) 634 635Strain fitness (log2 ratio) -2 -1 0 1at 633.736 kb on - strand, within DvMF_0537at 633.897 kb on + strand, within DvMF_0537at 634.391 kb on + strand, within DvMF_0538at 634.399 kb on - strand, within DvMF_0538at 634.399 kb on - strand, within DvMF_0538at 634.494 kb on - strand, within DvMF_0538at 634.546 kb on - strandat 634.679 kb on + strand, within DvMF_0539at 635.081 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.0125 mg/ml
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633,736 - DvMF_0537 0.62 +0.2
633,897 + DvMF_0537 0.75 -2.1
634,391 + DvMF_0538 0.55 -0.5
634,399 - DvMF_0538 0.57 -0.2
634,399 - DvMF_0538 0.57 -0.1
634,494 - DvMF_0538 0.88 +0.1
634,546 - +0.0
634,679 + DvMF_0539 0.24 -0.7
635,081 + +0.0

Or see this region's nucleotide sequence