Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2186

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2184 and Shewana3_2185 are separated by 332 nucleotidesShewana3_2185 and Shewana3_2186 overlap by 2 nucleotidesShewana3_2186 and Shewana3_2187 are separated by 23 nucleotides Shewana3_2184: Shewana3_2184 - hypothetical protein (RefSeq), at 2,622,334 to 2,623,602 _2184 Shewana3_2185: Shewana3_2185 - no description, at 2,623,935 to 2,624,186 _2185 Shewana3_2186: Shewana3_2186 - Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit-like protein (RefSeq), at 2,624,185 to 2,624,715 _2186 Shewana3_2187: Shewana3_2187 - hypothetical protein (RefSeq), at 2,624,739 to 2,626,139 _2187 Position (kb) 2624 2625Strain fitness (log2 ratio) -1 0 1at 2623.233 kb on - strand, within Shewana3_2184at 2623.466 kb on + strand, within Shewana3_2184at 2623.661 kb on + strandat 2623.669 kb on - strandat 2623.909 kb on - strandat 2623.953 kb on + strandat 2624.045 kb on - strand, within Shewana3_2185at 2624.397 kb on - strand, within Shewana3_2186at 2624.405 kb on - strand, within Shewana3_2186at 2624.456 kb on - strand, within Shewana3_2186at 2624.571 kb on - strand, within Shewana3_2186at 2624.818 kb on + strandat 2624.818 kb on + strandat 2624.821 kb on - strandat 2624.826 kb on - strandat 2624.826 kb on - strandat 2624.826 kb on - strandat 2624.927 kb on - strand, within Shewana3_2187at 2624.943 kb on - strand, within Shewana3_2187at 2625.136 kb on + strand, within Shewana3_2187at 2625.136 kb on + strand, within Shewana3_2187at 2625.315 kb on + strand, within Shewana3_2187at 2625.367 kb on + strand, within Shewana3_2187at 2625.367 kb on + strand, within Shewana3_2187at 2625.375 kb on - strand, within Shewana3_2187at 2625.644 kb on - strand, within Shewana3_2187

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,623,233 - Shewana3_2184 0.71 -1.6
2,623,466 + Shewana3_2184 0.89 +0.4
2,623,661 + +0.2
2,623,669 - +0.3
2,623,909 - -0.4
2,623,953 + -0.4
2,624,045 - Shewana3_2185 0.44 -0.5
2,624,397 - Shewana3_2186 0.40 +0.5
2,624,405 - Shewana3_2186 0.41 +0.5
2,624,456 - Shewana3_2186 0.51 +0.5
2,624,571 - Shewana3_2186 0.73 +1.5
2,624,818 + +0.4
2,624,818 + -1.2
2,624,821 - +0.5
2,624,826 - +0.9
2,624,826 - +0.3
2,624,826 - +1.2
2,624,927 - Shewana3_2187 0.13 -1.0
2,624,943 - Shewana3_2187 0.15 -0.5
2,625,136 + Shewana3_2187 0.28 -0.4
2,625,136 + Shewana3_2187 0.28 -0.6
2,625,315 + Shewana3_2187 0.41 +0.5
2,625,367 + Shewana3_2187 0.45 +0.4
2,625,367 + Shewana3_2187 0.45 +0.1
2,625,375 - Shewana3_2187 0.45 +0.2
2,625,644 - Shewana3_2187 0.65 +0.3

Or see this region's nucleotide sequence