Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0892 and Shewana3_0893 are separated by 12 nucleotides Shewana3_0893 and Shewana3_0894 are separated by 237 nucleotides
Shewana3_0892: Shewana3_0892 - phosphate transporter (RefSeq), at 1,038,528 to 1,039,997
_0892
Shewana3_0893: Shewana3_0893 - hypothetical protein (RefSeq), at 1,040,010 to 1,040,960
_0893
Shewana3_0894: Shewana3_0894 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 1,041,198 to 1,042,646
_0894
Position (kb)
1040
1041 Strain fitness (log2 ratio)
-1
0
1 at 1039.076 kb on + strand, within Shewana3_0892 at 1039.238 kb on + strand, within Shewana3_0892 at 1039.388 kb on - strand, within Shewana3_0892 at 1039.437 kb on - strand, within Shewana3_0892 at 1039.507 kb on + strand, within Shewana3_0892 at 1039.679 kb on - strand, within Shewana3_0892 at 1039.687 kb on + strand, within Shewana3_0892 at 1039.842 kb on - strand, within Shewana3_0892 at 1039.925 kb on + strand at 1039.944 kb on + strand at 1039.959 kb on + strand at 1040.207 kb on + strand, within Shewana3_0893 at 1040.429 kb on - strand, within Shewana3_0893 at 1040.526 kb on + strand, within Shewana3_0893 at 1040.749 kb on - strand, within Shewana3_0893 at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on - strand at 1041.118 kb on - strand at 1041.118 kb on - strand at 1041.118 kb on - strand at 1041.158 kb on + strand at 1041.178 kb on - strand at 1041.614 kb on + strand, within Shewana3_0894 at 1041.672 kb on + strand, within Shewana3_0894
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,039,076 + Shewana3_0892 0.37 -0.2 1,039,238 + Shewana3_0892 0.48 +0.3 1,039,388 - Shewana3_0892 0.59 +1.0 1,039,437 - Shewana3_0892 0.62 +0.6 1,039,507 + Shewana3_0892 0.67 +0.0 1,039,679 - Shewana3_0892 0.78 +0.4 1,039,687 + Shewana3_0892 0.79 -0.2 1,039,842 - Shewana3_0892 0.89 +0.2 1,039,925 + +0.6 1,039,944 + +0.7 1,039,959 + +0.5 1,040,207 + Shewana3_0893 0.21 +0.5 1,040,429 - Shewana3_0893 0.44 +0.3 1,040,526 + Shewana3_0893 0.54 +0.7 1,040,749 - Shewana3_0893 0.78 +0.6 1,041,110 + -0.4 1,041,110 + +1.3 1,041,110 + +0.2 1,041,110 + -0.6 1,041,110 - +0.0 1,041,118 - -0.2 1,041,118 - -0.0 1,041,118 - +0.4 1,041,158 + -0.4 1,041,178 - +0.0 1,041,614 + Shewana3_0894 0.29 +0.7 1,041,672 + Shewana3_0894 0.33 +0.1
Or see this region's nucleotide sequence