Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0846 and Shewana3_0847 are separated by 621 nucleotides Shewana3_0847 and Shewana3_0848 are separated by 170 nucleotides
Shewana3_0846: Shewana3_0846 - putative nitric oxide reductase (subunit B) transmembrane protein (RefSeq), at 980,576 to 982,861
_0846
Shewana3_0847: Shewana3_0847 - potassium/proton antiporter (RefSeq), at 983,483 to 985,207
_0847
Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229
_0848
Position (kb) 983
984
985
986 Strain fitness (log2 ratio) -1
0
1 at 982.648 kb on - strand at 982.900 kb on - strand at 983.058 kb on - strand at 983.330 kb on + strand at 983.653 kb on + strand at 983.772 kb on + strand, within Shewana3_0847 at 983.862 kb on - strand, within Shewana3_0847 at 983.916 kb on + strand, within Shewana3_0847 at 983.916 kb on + strand, within Shewana3_0847 at 983.916 kb on + strand, within Shewana3_0847 at 983.924 kb on - strand, within Shewana3_0847 at 984.039 kb on + strand, within Shewana3_0847 at 984.089 kb on + strand, within Shewana3_0847 at 984.355 kb on + strand, within Shewana3_0847 at 984.395 kb on + strand, within Shewana3_0847 at 984.599 kb on + strand, within Shewana3_0847 at 984.644 kb on - strand, within Shewana3_0847 at 984.678 kb on - strand, within Shewana3_0847 at 984.909 kb on + strand, within Shewana3_0847 at 985.042 kb on - strand at 985.216 kb on + strand at 985.216 kb on + strand at 985.224 kb on - strand at 985.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 982,648 - +0.9 982,900 - +0.2 983,058 - -1.4 983,330 + -0.0 983,653 + -0.7 983,772 + Shewana3_0847 0.17 -0.9 983,862 - Shewana3_0847 0.22 +0.2 983,916 + Shewana3_0847 0.25 -0.9 983,916 + Shewana3_0847 0.25 -0.8 983,916 + Shewana3_0847 0.25 +0.0 983,924 - Shewana3_0847 0.26 +0.5 984,039 + Shewana3_0847 0.32 +0.9 984,089 + Shewana3_0847 0.35 +0.5 984,355 + Shewana3_0847 0.51 -0.0 984,395 + Shewana3_0847 0.53 +0.6 984,599 + Shewana3_0847 0.65 +0.0 984,644 - Shewana3_0847 0.67 +0.3 984,678 - Shewana3_0847 0.69 +0.5 984,909 + Shewana3_0847 0.83 -0.5 985,042 - +0.5 985,216 + -0.1 985,216 + -1.1 985,224 - +0.3 985,224 - +0.2
Or see this region's nucleotide sequence