Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0786 and Shewana3_0787 are separated by 184 nucleotides Shewana3_0787 and Shewana3_0788 are separated by 268 nucleotides Shewana3_0788 and Shewana3_0789 are separated by 52 nucleotides
Shewana3_0786: Shewana3_0786 - hypothetical protein (RefSeq), at 907,230 to 907,808
_0786
Shewana3_0787: Shewana3_0787 - OmpA-like transmembrane domain-containing protein (RefSeq), at 907,993 to 908,496
_0787
Shewana3_0788: Shewana3_0788 - hypothetical protein (RefSeq), at 908,765 to 909,796
_0788
Shewana3_0789: Shewana3_0789 - sterol desaturase family protein (RefSeq), at 909,849 to 910,712
_0789
Position (kb) 908
909
910 Strain fitness (log2 ratio) -1
0
1
2
3 at 907.893 kb on + strand at 907.901 kb on - strand at 907.916 kb on - strand at 907.985 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 908.196 kb on + strand, within Shewana3_0787 at 908.237 kb on + strand, within Shewana3_0787 at 908.253 kb on - strand, within Shewana3_0787 at 908.316 kb on - strand, within Shewana3_0787 at 908.359 kb on + strand, within Shewana3_0787 at 908.413 kb on + strand, within Shewana3_0787 at 908.489 kb on - strand at 908.750 kb on + strand at 908.753 kb on - strand at 908.797 kb on - strand at 909.213 kb on + strand, within Shewana3_0788 at 909.213 kb on + strand, within Shewana3_0788 at 909.221 kb on - strand, within Shewana3_0788 at 909.277 kb on - strand, within Shewana3_0788 at 909.286 kb on - strand, within Shewana3_0788 at 909.326 kb on - strand, within Shewana3_0788 at 909.543 kb on - strand, within Shewana3_0788 at 909.587 kb on - strand, within Shewana3_0788 at 909.587 kb on - strand, within Shewana3_0788 at 909.778 kb on + strand at 910.047 kb on + strand, within Shewana3_0789 at 910.064 kb on + strand, within Shewana3_0789 at 910.120 kb on + strand, within Shewana3_0789 at 910.120 kb on + strand, within Shewana3_0789 at 910.128 kb on - strand, within Shewana3_0789 at 910.138 kb on - strand, within Shewana3_0789 at 910.171 kb on - strand, within Shewana3_0789 at 910.185 kb on - strand, within Shewana3_0789 at 910.259 kb on + strand, within Shewana3_0789 at 910.424 kb on - strand, within Shewana3_0789 at 910.429 kb on - strand, within Shewana3_0789 at 910.579 kb on + strand, within Shewana3_0789 at 910.768 kb on - strand at 910.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 907,893 + +0.2 907,901 - -0.5 907,916 - +0.8 907,985 + +0.4 907,990 + -0.7 907,990 + -0.8 907,990 + -1.7 908,196 + Shewana3_0787 0.40 +0.1 908,237 + Shewana3_0787 0.48 +0.3 908,253 - Shewana3_0787 0.52 -0.3 908,316 - Shewana3_0787 0.64 -0.6 908,359 + Shewana3_0787 0.73 -0.0 908,413 + Shewana3_0787 0.83 +0.4 908,489 - -0.6 908,750 + +0.4 908,753 - -1.3 908,797 - -0.1 909,213 + Shewana3_0788 0.43 -0.2 909,213 + Shewana3_0788 0.43 +0.5 909,221 - Shewana3_0788 0.44 +0.3 909,277 - Shewana3_0788 0.50 +0.7 909,286 - Shewana3_0788 0.50 +0.5 909,326 - Shewana3_0788 0.54 +0.4 909,543 - Shewana3_0788 0.75 -0.0 909,587 - Shewana3_0788 0.80 -0.3 909,587 - Shewana3_0788 0.80 +1.0 909,778 + +0.9 910,047 + Shewana3_0789 0.23 +2.9 910,064 + Shewana3_0789 0.25 +0.1 910,120 + Shewana3_0789 0.31 +0.4 910,120 + Shewana3_0789 0.31 +0.5 910,128 - Shewana3_0789 0.32 +0.4 910,138 - Shewana3_0789 0.33 -0.4 910,171 - Shewana3_0789 0.37 -1.2 910,185 - Shewana3_0789 0.39 +0.3 910,259 + Shewana3_0789 0.47 +0.3 910,424 - Shewana3_0789 0.67 -0.4 910,429 - Shewana3_0789 0.67 +0.3 910,579 + Shewana3_0789 0.84 +0.1 910,768 - +0.8 910,796 - +0.3
Or see this region's nucleotide sequence