Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0354 and Shewana3_0355 are separated by 196 nucleotides Shewana3_0355 and Shewana3_0356 are separated by 590 nucleotides
Shewana3_0354: Shewana3_0354 - DNA-binding transcriptional regulator IlvY (RefSeq), at 389,048 to 389,920
_0354
Shewana3_0355: Shewana3_0355 - ketol-acid reductoisomerase (RefSeq), at 390,117 to 391,595
_0355
Shewana3_0356: Shewana3_0356 - acetolactate synthase 2 catalytic subunit (RefSeq), at 392,186 to 393,859
_0356
Position (kb) 390
391
392 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 389.199 kb on - strand, within Shewana3_0354 at 389.217 kb on - strand, within Shewana3_0354 at 389.288 kb on - strand, within Shewana3_0354 at 389.399 kb on + strand, within Shewana3_0354 at 389.407 kb on - strand, within Shewana3_0354 at 389.433 kb on + strand, within Shewana3_0354 at 389.689 kb on - strand, within Shewana3_0354 at 389.716 kb on - strand, within Shewana3_0354 at 389.747 kb on + strand, within Shewana3_0354 at 389.755 kb on - strand, within Shewana3_0354 at 389.878 kb on - strand at 390.281 kb on - strand, within Shewana3_0355 at 390.396 kb on - strand, within Shewana3_0355 at 390.448 kb on + strand, within Shewana3_0355 at 390.458 kb on + strand, within Shewana3_0355 at 390.466 kb on - strand, within Shewana3_0355 at 390.675 kb on + strand, within Shewana3_0355 at 390.676 kb on + strand, within Shewana3_0355 at 390.684 kb on - strand, within Shewana3_0355 at 390.711 kb on + strand, within Shewana3_0355 at 390.816 kb on + strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.855 kb on - strand, within Shewana3_0355 at 390.947 kb on + strand, within Shewana3_0355 at 391.002 kb on + strand, within Shewana3_0355 at 391.095 kb on - strand, within Shewana3_0355 at 391.149 kb on - strand, within Shewana3_0355 at 391.216 kb on - strand, within Shewana3_0355 at 391.348 kb on - strand, within Shewana3_0355 at 391.354 kb on + strand, within Shewana3_0355 at 391.363 kb on + strand, within Shewana3_0355 at 391.383 kb on - strand, within Shewana3_0355 at 391.385 kb on + strand, within Shewana3_0355 at 391.442 kb on + strand, within Shewana3_0355 at 391.442 kb on + strand, within Shewana3_0355 at 391.463 kb on - strand at 391.525 kb on + strand at 391.849 kb on - strand at 392.295 kb on + strand at 392.295 kb on + strand at 392.327 kb on + strand at 392.512 kb on + strand, within Shewana3_0356 at 392.573 kb on - strand, within Shewana3_0356 at 392.585 kb on - strand, within Shewana3_0356
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 389,199 - Shewana3_0354 0.17 -5.0 389,217 - Shewana3_0354 0.19 -5.2 389,288 - Shewana3_0354 0.27 -2.9 389,399 + Shewana3_0354 0.40 -2.6 389,407 - Shewana3_0354 0.41 -4.2 389,433 + Shewana3_0354 0.44 -4.5 389,689 - Shewana3_0354 0.73 -4.9 389,716 - Shewana3_0354 0.77 -4.3 389,747 + Shewana3_0354 0.80 -2.3 389,755 - Shewana3_0354 0.81 -4.5 389,878 - -4.7 390,281 - Shewana3_0355 0.11 -3.7 390,396 - Shewana3_0355 0.19 -5.1 390,448 + Shewana3_0355 0.22 -5.0 390,458 + Shewana3_0355 0.23 -7.9 390,466 - Shewana3_0355 0.24 -3.8 390,675 + Shewana3_0355 0.38 -6.2 390,676 + Shewana3_0355 0.38 -4.9 390,684 - Shewana3_0355 0.38 -4.5 390,711 + Shewana3_0355 0.40 -7.0 390,816 + Shewana3_0355 0.47 -6.4 390,824 - Shewana3_0355 0.48 -6.5 390,824 - Shewana3_0355 0.48 -6.2 390,855 - Shewana3_0355 0.50 -5.4 390,947 + Shewana3_0355 0.56 -4.3 391,002 + Shewana3_0355 0.60 -5.7 391,095 - Shewana3_0355 0.66 -5.7 391,149 - Shewana3_0355 0.70 -6.2 391,216 - Shewana3_0355 0.74 -5.2 391,348 - Shewana3_0355 0.83 -6.2 391,354 + Shewana3_0355 0.84 -4.2 391,363 + Shewana3_0355 0.84 -6.4 391,383 - Shewana3_0355 0.86 -4.4 391,385 + Shewana3_0355 0.86 -4.9 391,442 + Shewana3_0355 0.90 -4.5 391,442 + Shewana3_0355 0.90 -5.4 391,463 - -6.9 391,525 + -5.0 391,849 - -4.8 392,295 + -4.0 392,295 + -5.5 392,327 + -3.0 392,512 + Shewana3_0356 0.19 -0.5 392,573 - Shewana3_0356 0.23 -2.4 392,585 - Shewana3_0356 0.24 -4.2
Or see this region's nucleotide sequence