Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ribB and Shewana3_0135 are separated by 684 nucleotides Shewana3_0135 and Shewana3_0136 are separated by 22 nucleotides Shewana3_0136 and Shewana3_0137 are separated by 318 nucleotides
Shewana3_0134: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 152,062 to 152,715
ribB
Shewana3_0135: Shewana3_0135 - oligopeptidase B (RefSeq), at 153,400 to 155,535
_0135
Shewana3_0136: Shewana3_0136 - excinuclease ABC subunit C (RefSeq), at 155,558 to 155,980
_0136
Shewana3_0137: Shewana3_0137 - hypothetical protein (RefSeq), at 156,299 to 157,129
_0137
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 152.486 kb on - strand, within ribB at 152.707 kb on - strand at 152.792 kb on + strand at 152.825 kb on + strand at 152.864 kb on + strand at 152.872 kb on - strand at 152.955 kb on - strand at 153.015 kb on + strand at 153.271 kb on + strand at 153.271 kb on + strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.326 kb on - strand at 153.337 kb on + strand at 153.638 kb on - strand, within Shewana3_0135 at 153.643 kb on - strand, within Shewana3_0135 at 153.806 kb on + strand, within Shewana3_0135 at 153.876 kb on - strand, within Shewana3_0135 at 154.060 kb on + strand, within Shewana3_0135 at 154.082 kb on + strand, within Shewana3_0135 at 154.090 kb on - strand, within Shewana3_0135 at 154.097 kb on + strand, within Shewana3_0135 at 154.105 kb on + strand, within Shewana3_0135 at 154.157 kb on - strand, within Shewana3_0135 at 154.229 kb on + strand, within Shewana3_0135 at 154.229 kb on + strand, within Shewana3_0135 at 154.237 kb on - strand, within Shewana3_0135 at 154.249 kb on + strand, within Shewana3_0135 at 154.291 kb on - strand, within Shewana3_0135 at 154.291 kb on - strand, within Shewana3_0135 at 154.485 kb on + strand, within Shewana3_0135 at 154.493 kb on - strand, within Shewana3_0135 at 154.529 kb on + strand, within Shewana3_0135 at 154.529 kb on + strand, within Shewana3_0135 at 154.617 kb on - strand, within Shewana3_0135 at 154.617 kb on - strand, within Shewana3_0135 at 154.759 kb on - strand, within Shewana3_0135 at 154.898 kb on + strand, within Shewana3_0135 at 155.017 kb on + strand, within Shewana3_0135 at 155.025 kb on - strand, within Shewana3_0135 at 155.031 kb on + strand, within Shewana3_0135 at 155.158 kb on - strand, within Shewana3_0135 at 155.251 kb on + strand, within Shewana3_0135 at 155.350 kb on - strand at 155.507 kb on + strand at 155.515 kb on - strand at 155.761 kb on + strand, within Shewana3_0136 at 155.761 kb on + strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.796 kb on + strand, within Shewana3_0136 at 155.829 kb on - strand, within Shewana3_0136 at 155.908 kb on - strand, within Shewana3_0136 at 156.069 kb on + strand at 156.126 kb on - strand at 156.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 152,486 - ribB Shewana3_0134 0.65 +0.4 152,707 - +0.3 152,792 + -0.3 152,825 + +0.3 152,864 + -0.0 152,872 - -0.0 152,955 - +0.4 153,015 + -0.9 153,271 + -0.4 153,271 + +0.6 153,279 - +1.4 153,279 - +0.5 153,279 - -0.3 153,279 - +0.7 153,326 - +0.6 153,337 + +0.2 153,638 - Shewana3_0135 0.11 +0.2 153,643 - Shewana3_0135 0.11 +0.5 153,806 + Shewana3_0135 0.19 -0.3 153,876 - Shewana3_0135 0.22 +0.5 154,060 + Shewana3_0135 0.31 -0.9 154,082 + Shewana3_0135 0.32 +0.5 154,090 - Shewana3_0135 0.32 -0.5 154,097 + Shewana3_0135 0.33 +0.4 154,105 + Shewana3_0135 0.33 +0.8 154,157 - Shewana3_0135 0.35 +0.1 154,229 + Shewana3_0135 0.39 -3.0 154,229 + Shewana3_0135 0.39 +0.7 154,237 - Shewana3_0135 0.39 +1.0 154,249 + Shewana3_0135 0.40 -0.4 154,291 - Shewana3_0135 0.42 -0.5 154,291 - Shewana3_0135 0.42 +0.4 154,485 + Shewana3_0135 0.51 +0.6 154,493 - Shewana3_0135 0.51 -0.0 154,529 + Shewana3_0135 0.53 +0.6 154,529 + Shewana3_0135 0.53 +0.8 154,617 - Shewana3_0135 0.57 +0.0 154,617 - Shewana3_0135 0.57 +0.5 154,759 - Shewana3_0135 0.64 -1.0 154,898 + Shewana3_0135 0.70 +0.5 155,017 + Shewana3_0135 0.76 +0.1 155,025 - Shewana3_0135 0.76 -0.1 155,031 + Shewana3_0135 0.76 +0.5 155,158 - Shewana3_0135 0.82 +0.6 155,251 + Shewana3_0135 0.87 +0.6 155,350 - -0.3 155,507 + +0.4 155,515 - +0.2 155,761 + Shewana3_0136 0.48 +0.2 155,761 + Shewana3_0136 0.48 +0.4 155,769 - Shewana3_0136 0.50 +0.5 155,769 - Shewana3_0136 0.50 +0.5 155,796 + Shewana3_0136 0.56 -1.5 155,829 - Shewana3_0136 0.64 +0.5 155,908 - Shewana3_0136 0.83 -0.5 156,069 + -0.3 156,126 - -0.6 156,316 - +0.2
Or see this region's nucleotide sequence