Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4302 and Shewana3_4303 are separated by 271 nucleotides Shewana3_4303 and Shewana3_4304 are separated by 288 nucleotides
Shewana3_4302: Shewana3_4302 - heavy metal translocating P-type ATPase (RefSeq), at 187,406 to 189,853
_4302
Shewana3_4303: Shewana3_4303 - peptidase M23B (RefSeq), at 190,125 to 190,862
_4303
Shewana3_4304: Shewana3_4304 - hypothetical protein (RefSeq), at 191,151 to 191,600
_4304
Position (kb) 190
191 Strain fitness (log2 ratio) -1
0
1
2 at 189.330 kb on - strand, within Shewana3_4302 at 189.547 kb on + strand, within Shewana3_4302 at 189.555 kb on - strand, within Shewana3_4302 at 189.604 kb on + strand, within Shewana3_4302 at 189.604 kb on + strand, within Shewana3_4302 at 189.604 kb on + strand, within Shewana3_4302 at 189.733 kb on + strand at 189.733 kb on + strand at 189.741 kb on - strand at 189.940 kb on + strand at 189.972 kb on - strand at 190.310 kb on + strand, within Shewana3_4303 at 190.323 kb on - strand, within Shewana3_4303 at 190.421 kb on - strand, within Shewana3_4303 at 190.421 kb on - strand, within Shewana3_4303 at 190.528 kb on - strand, within Shewana3_4303 at 190.765 kb on + strand, within Shewana3_4303 at 190.773 kb on - strand, within Shewana3_4303 at 191.020 kb on - strand at 191.055 kb on + strand at 191.055 kb on + strand at 191.198 kb on - strand, within Shewana3_4304 at 191.198 kb on - strand, within Shewana3_4304 at 191.233 kb on - strand, within Shewana3_4304 at 191.233 kb on - strand, within Shewana3_4304 at 191.474 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.540 kb on + strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.559 kb on - strand at 191.603 kb on + strand at 191.619 kb on - strand at 191.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 189,330 - Shewana3_4302 0.79 +1.8 189,547 + Shewana3_4302 0.87 -0.7 189,555 - Shewana3_4302 0.88 +0.7 189,604 + Shewana3_4302 0.90 -0.1 189,604 + Shewana3_4302 0.90 -0.2 189,604 + Shewana3_4302 0.90 -0.1 189,733 + +0.0 189,733 + +0.9 189,741 - +0.8 189,940 + -0.6 189,972 - +0.4 190,310 + Shewana3_4303 0.25 -0.8 190,323 - Shewana3_4303 0.27 -0.8 190,421 - Shewana3_4303 0.40 -0.3 190,421 - Shewana3_4303 0.40 -0.7 190,528 - Shewana3_4303 0.55 -1.3 190,765 + Shewana3_4303 0.87 +0.6 190,773 - Shewana3_4303 0.88 -1.1 191,020 - +0.1 191,055 + -0.5 191,055 + +0.9 191,198 - Shewana3_4304 0.10 +0.5 191,198 - Shewana3_4304 0.10 +0.5 191,233 - Shewana3_4304 0.18 +0.5 191,233 - Shewana3_4304 0.18 -0.5 191,474 + Shewana3_4304 0.72 +1.2 191,530 + Shewana3_4304 0.84 +0.5 191,530 + Shewana3_4304 0.84 +0.8 191,530 + Shewana3_4304 0.84 -0.2 191,530 + Shewana3_4304 0.84 -0.7 191,538 - Shewana3_4304 0.86 +0.8 191,538 - Shewana3_4304 0.86 -0.1 191,538 - Shewana3_4304 0.86 -0.5 191,540 + Shewana3_4304 0.86 -0.5 191,549 - Shewana3_4304 0.88 +0.5 191,549 - Shewana3_4304 0.88 -0.0 191,549 - Shewana3_4304 0.88 +0.9 191,559 - +0.0 191,603 + -0.9 191,619 - +0.1 191,761 + +1.1
Or see this region's nucleotide sequence