Strain Fitness in Shewanella amazonensis SB2B around Sama_2671

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
3,195,240	-				-0.6
3,195,311	+		Sama_2669	0.13	-0.8
3,195,312	-		Sama_2669	0.13	-0.5
3,195,314	+		Sama_2669	0.13	-1.8
3,195,314	+		Sama_2669	0.13	+0.6
3,195,314	+		Sama_2669	0.13	-0.8
3,195,390	+		Sama_2669	0.25	+0.2
3,195,390	+		Sama_2669	0.25	+0.6
3,195,390	+		Sama_2669	0.25	-0.7
3,195,391	-		Sama_2669	0.25	-0.4
3,195,428	+		Sama_2669	0.31	-1.6
3,195,428	+		Sama_2669	0.31	-0.8
3,195,429	-		Sama_2669	0.31	-1.6
3,195,429	-		Sama_2669	0.31	+0.1
3,195,446	+		Sama_2669	0.34	-1.1
3,195,453	+		Sama_2669	0.35	-0.0
3,195,453	+		Sama_2669	0.35	-0.1
3,195,453	+		Sama_2669	0.35	+3.8
3,195,454	-		Sama_2669	0.35	-0.7
3,195,454	-		Sama_2669	0.35	-0.2
3,195,454	-		Sama_2669	0.35	+0.2
3,195,454	-		Sama_2669	0.35	-0.8
3,195,454	-		Sama_2669	0.35	+0.3
3,195,454	-		Sama_2669	0.35	+0.0
3,195,454	-		Sama_2669	0.35	+2.4
3,195,456	-		Sama_2669	0.35	+0.2
3,195,597	-		Sama_2669	0.57	+0.1
3,195,636	+		Sama_2669	0.63	+0.1
3,195,637	-		Sama_2669	0.63	-1.2
3,195,637	-		Sama_2669	0.63	-1.9
3,195,790	-		Sama_2669	0.87	-0.6
3,195,790	-		Sama_2669	0.87	-0.2
3,195,853	-				-4.0
3,195,971	+		Sama_2670	0.30	-3.3
3,195,971	+		Sama_2670	0.30	-0.7
3,196,100	+		Sama_2670	0.69	-0.8
3,196,101	-		Sama_2670	0.69	+0.8
3,196,121	+		Sama_2670	0.75	-2.2
3,196,153	+		Sama_2670	0.85	-1.7
3,196,246	+				-0.2
3,196,246	+				+0.4
3,196,247	-				-1.6
3,196,260	+				-2.4
3,196,260	+				+1.0
3,196,261	-				-0.9
3,196,270	-				-0.0
3,196,338	+		Sama_2671	0.12	+1.9
3,196,338	+		Sama_2671	0.12	-0.0
3,196,339	-		Sama_2671	0.12	+0.1
3,196,370	+		Sama_2671	0.16	-0.2
3,196,371	-		Sama_2671	0.16	-0.2
3,196,371	-		Sama_2671	0.16	-0.6
3,196,453	+		Sama_2671	0.26	+0.4
3,196,454	-		Sama_2671	0.26	-1.2
3,196,454	-		Sama_2671	0.26	+0.3
3,196,593	+		Sama_2671	0.42	+0.3
3,196,593	+		Sama_2671	0.42	-0.1
3,196,636	-		Sama_2671	0.48	+0.8
3,196,636	-		Sama_2671	0.48	-1.0
3,196,672	+		Sama_2671	0.52	+0.5
3,196,673	-		Sama_2671	0.52	-0.6
3,196,677	+		Sama_2671	0.52	+0.6
3,196,677	+		Sama_2671	0.52	-0.4
3,196,677	+		Sama_2671	0.52	+0.6
3,196,677	+		Sama_2671	0.52	-0.2
3,196,677	+		Sama_2671	0.52	-0.2
3,196,677	+		Sama_2671	0.52	+0.4
3,196,678	-		Sama_2671	0.53	+0.8
3,196,710	+		Sama_2671	0.56	+1.1
3,196,710	+		Sama_2671	0.56	-0.6
3,196,710	+		Sama_2671	0.56	-0.2
3,196,710	+		Sama_2671	0.56	+0.3
3,196,710	+		Sama_2671	0.56	+0.8
3,196,710	+		Sama_2671	0.56	-1.2
3,196,710	+		Sama_2671	0.56	+1.4
3,196,710	+		Sama_2671	0.56	+1.4
3,196,710	+		Sama_2671	0.56	+0.5
3,196,710	+		Sama_2671	0.56	+0.1
3,196,710	+		Sama_2671	0.56	-1.0
3,196,710	+		Sama_2671	0.56	-0.7
3,196,710	+		Sama_2671	0.56	-0.8
3,196,711	-		Sama_2671	0.56	+0.5
3,196,711	-		Sama_2671	0.56	+0.1
3,196,711	-		Sama_2671	0.56	+0.4
3,196,711	-		Sama_2671	0.56	+0.1
3,196,711	-		Sama_2671	0.56	+0.1
3,196,711	-		Sama_2671	0.56	-0.3
3,196,711	-		Sama_2671	0.56	-0.5
3,196,711	-		Sama_2671	0.56	+0.8
3,196,711	-		Sama_2671	0.56	-2.2
3,196,711	-		Sama_2671	0.56	-0.1
3,196,715	-		Sama_2671	0.57	+0.0
3,196,715	-		Sama_2671	0.57	-0.3
3,196,751	-		Sama_2671	0.61	+2.2
3,196,751	-		Sama_2671	0.61	-0.1
3,196,766	+		Sama_2671	0.63	+0.1
3,196,849	+		Sama_2671	0.73	-0.6
3,196,849	+		Sama_2671	0.73	+0.1
3,196,850	-		Sama_2671	0.73	+0.4
3,196,859	+		Sama_2671	0.74	+0.2
3,196,859	+		Sama_2671	0.74	-1.6
3,196,859	+		Sama_2671	0.74	+0.4
3,196,860	-		Sama_2671	0.74	+0.0
3,196,860	-		Sama_2671	0.74	-0.5
3,196,860	-		Sama_2671	0.74	-0.1
3,196,861	+		Sama_2671	0.74	+0.6
3,196,861	+		Sama_2671	0.74	-1.9
3,196,861	+		Sama_2671	0.74	+0.3
3,196,861	+		Sama_2671	0.74	+0.7
3,196,861	+		Sama_2671	0.74	+0.4
3,196,861	+		Sama_2671	0.74	-2.0
3,196,861	+		Sama_2671	0.74	+3.1
3,196,861	+		Sama_2671	0.74	+1.1
3,196,861	+		Sama_2671	0.74	-2.4
3,196,862	-		Sama_2671	0.74	+0.1
3,196,862	-		Sama_2671	0.74	+0.4
3,196,862	-		Sama_2671	0.74	+0.6
3,196,862	-		Sama_2671	0.74	-0.8
3,196,862	-		Sama_2671	0.74	-2.0
3,196,921	+		Sama_2671	0.81	+1.1
3,196,980	+		Sama_2671	0.88	+0.8
3,196,980	+		Sama_2671	0.88	-2.1
3,196,980	+		Sama_2671	0.88	-0.2
3,196,980	+		Sama_2671	0.88	+2.4
3,196,980	+		Sama_2671	0.88	+0.4
3,196,981	-		Sama_2671	0.88	+1.4
3,196,981	-		Sama_2671	0.88	-0.8
3,197,010	+				+0.4
3,197,090	-				-0.3
3,197,162	-				+1.5
3,197,162	-				+0.4
3,197,162	-				+0.7
3,197,162	-				-1.2
3,197,162	-				-0.4
3,197,180	+				+0.5
3,197,180	+				-0.1
3,197,180	+				-0.1
3,197,180	+				-1.2
3,197,180	+				+0.3
3,197,180	+				-0.2
3,197,180	+				-1.1
3,197,181	-				-0.9
3,197,181	-				+0.0
3,197,181	-				+1.6
3,197,181	-				-1.2
3,197,273	-				+0.2
3,197,280	+				-0.2
3,197,280	+				+0.2
3,197,281	-				+0.8
3,197,281	-				-0.8
3,197,339	+				-0.5
3,197,339	+				-0.2
3,197,339	+				+1.8
3,197,339	+				+1.6
3,197,339	+				+0.3
3,197,339	+				-0.3
3,197,339	+				-2.6
3,197,339	+				-0.2
3,197,339	+				+1.1
3,197,340	-				+0.8
3,197,340	-				-0.8
3,197,340	-				-0.6
3,197,340	-				-0.8
3,197,340	-				-0.5
3,197,352	+		Sama_2672	0.10	-0.3
3,197,353	-		Sama_2672	0.10	-0.7
3,197,356	+		Sama_2672	0.10	-2.5
3,197,356	+		Sama_2672	0.10	+0.2
3,197,356	+		Sama_2672	0.10	+0.3
3,197,356	+		Sama_2672	0.10	-2.6
3,197,356	+		Sama_2672	0.10	+0.7
3,197,356	+		Sama_2672	0.10	-1.0
3,197,357	-		Sama_2672	0.10	+0.5
3,197,357	-		Sama_2672	0.10	-0.8
3,197,357	-		Sama_2672	0.10	+1.0
3,197,357	-		Sama_2672	0.10	-0.8
3,197,357	-		Sama_2672	0.10	-2.4
3,197,357	-		Sama_2672	0.10	+0.4
3,197,357	-		Sama_2672	0.10	+0.0
3,197,410	-		Sama_2672	0.14	+1.1
3,197,410	-		Sama_2672	0.14	-0.9
3,197,410	-		Sama_2672	0.14	+0.0
3,197,410	-		Sama_2672	0.14	-2.6
3,197,410	-		Sama_2672	0.14	+0.9
3,197,414	+		Sama_2672	0.14	-1.9
3,197,415	-		Sama_2672	0.14	+0.4
3,197,415	-		Sama_2672	0.14	-1.3
3,197,415	-		Sama_2672	0.14	+0.9
3,197,427	-		Sama_2672	0.15	+0.5
3,197,639	+		Sama_2672	0.29	-0.8
3,197,639	+		Sama_2672	0.29	-0.1
3,197,639	+		Sama_2672	0.29	-2.2
3,197,639	+		Sama_2672	0.29	+2.5
3,197,640	-		Sama_2672	0.30	-0.8
3,197,640	-		Sama_2672	0.30	-0.2
3,197,640	-		Sama_2672	0.30	-2.0
3,197,640	-		Sama_2672	0.30	-0.7
3,197,649	+		Sama_2672	0.30	-1.7
3,197,649	+		Sama_2672	0.30	+1.7
3,197,649	+		Sama_2672	0.30	-0.6
3,197,649	+		Sama_2672	0.30	-0.6
3,197,649	+		Sama_2672	0.30	+0.2
3,197,650	-		Sama_2672	0.30	+0.8
3,197,650	-		Sama_2672	0.30	+1.6
3,197,650	-		Sama_2672	0.30	-0.5
3,197,650	-		Sama_2672	0.30	-2.0
3,197,650	-		Sama_2672	0.30	-0.2
3,197,769	+		Sama_2672	0.38	-1.2
3,197,769	+		Sama_2672	0.38	+0.9
3,197,769	+		Sama_2672	0.38	+0.8
3,197,769	+		Sama_2672	0.38	+0.2
3,197,769	+		Sama_2672	0.38	+0.0
3,197,769	+		Sama_2672	0.38	-0.6
3,197,770	-		Sama_2672	0.38	+0.2
3,197,775	+		Sama_2672	0.39	-0.9
3,197,775	+		Sama_2672	0.39	-0.0
3,197,776	-		Sama_2672	0.39	-0.4
3,197,776	-		Sama_2672	0.39	-0.7
3,197,776	-		Sama_2672	0.39	-0.5
3,197,776	-		Sama_2672	0.39	-0.3
3,197,776	-		Sama_2672	0.39	-1.1
3,197,784	+		Sama_2672	0.39	-0.7
3,197,784	+		Sama_2672	0.39	-0.3
3,197,785	-		Sama_2672	0.39	+0.4
3,197,785	-		Sama_2672	0.39	-1.2
3,197,889	+		Sama_2672	0.46	-2.1
3,197,889	+		Sama_2672	0.46	+0.2
3,197,889	+		Sama_2672	0.46	-0.8
3,197,890	-		Sama_2672	0.46	-1.1